RNA id: TU481165



Basic Information


Item Value
RNA id TU481165
length 222
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G418885
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1925916 ~ 1926137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTCCCTTAATTGGCTCCATAACATAGTCAACTACTACAGTATAAGAGCCATATAGATTATCATATAGATTAAAATTTAAATTTCATGAAAAAGTTCAATTTGAAAGGATTAGTACTGAAATCATTTTTGCTCCTAATATTAAACATTCTAAAATTTCAATCCCATCACTGTAAATTTGTGCCTGAAAAAAAAAAAAAAAAATTACCCATGGCATTCTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU481164 lncRNA upstream 687 1924419 ~ 1925229 (+) True G418884
TU481163 lncRNA upstream 1741 1923914 ~ 1924175 (+) True G418883
TU481152 lncRNA upstream 16591 1909119 ~ 1909325 (+) True G418872
TU481145 lncRNA upstream 25140 1899156 ~ 1900776 (+) True G418865
TU481137 lncRNA upstream 65810 1859877 ~ 1860106 (+) True G418861
TU481166 lncRNA downstream 85 1926222 ~ 1926560 (+) True G418886
TU481191 lncRNA downstream 133215 2059352 ~ 2066863 (+) True G418909
TU481279 lncRNA downstream 160173 2086310 ~ 2086528 (+) True G418980
TU481299 lncRNA downstream 254424 2180561 ~ 2184793 (+) True G418998
TU481303 lncRNA downstream 260594 2186731 ~ 2187419 (+) True G419001
CI01000304_01877287_01890608.mRNA mRNA upstream 35170 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_01829156_01835147.mRNA mRNA upstream 90751 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01718700_01722248.mRNA mRNA upstream 203640 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01681164_01706159.mRNA mRNA upstream 219519 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01392985_01399147.mRNA mRNA upstream 526763 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_02136252_02167869.mRNA mRNA downstream 210115 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
CI01000304_02206338_02219356.mRNA mRNA downstream 280201 2206338 ~ 2219642 (+) True CI01000304_02206338_02219356
CI01000304_02229520_02235812.mRNA mRNA downstream 303002 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
CI01000304_02236583_02240921.mRNA mRNA downstream 310230 2236367 ~ 2241608 (+) True CI01000304_02236583_02240921
CI01000304_02254859_02262580.mRNA mRNA downstream 327757 2253894 ~ 2264078 (+) False CI01000304_02254859_02262580
TU480282 other upstream 1050667 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1361465 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1698063 226703 ~ 227853 (+) True G417987
TU481280 other downstream 166357 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2377199 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3247086 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4315096 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5426512 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile