RNA id: TU481166


Basic Information

Item Value
RNA id TU481166
length 339
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G418886
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1926222 ~ 1926560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATAGAATACTTGTGCTTTGAGCCAAGAATATTTCCAGCAAAAAAATAACTTATGGGACTACTAAGCTTGAAGAAGCACATATGAGTTAATGAAATACTGTAAGACTAATATTTATGTTGTCATTCACAAGTATAGCACACAAATGGCACTGTCCTCTCATGTTGATTCTGCTCTTATGCAACACATATTACATGTGTCTACATGCTGTAATACATAAAACTAATTGCCACAATAGCAGATGGTTAATTTTACAAATTTACAGTCTGGAATGAGACATAGATGTATTCAAATAACAGTTATAATTTTCCTCTCAATTATATTTACATAACGTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481165 lncRNA upstream 85 1925916 ~ 1926137 (+) True G418885
TU481164 lncRNA upstream 993 1924419 ~ 1925229 (+) True G418884
TU481163 lncRNA upstream 2047 1923914 ~ 1924175 (+) True G418883
TU481152 lncRNA upstream 16897 1909119 ~ 1909325 (+) True G418872
TU481145 lncRNA upstream 25446 1899156 ~ 1900776 (+) True G418865
TU481191 lncRNA downstream 132792 2059352 ~ 2066863 (+) True G418909
TU481279 lncRNA downstream 159750 2086310 ~ 2086528 (+) True G418980
TU481299 lncRNA downstream 254001 2180561 ~ 2184793 (+) True G418998
TU481303 lncRNA downstream 260171 2186731 ~ 2187419 (+) True G419001
TU481308 lncRNA downstream 302081 2228641 ~ 2228848 (+) True G419006
CI01000304_01877287_01890608.mRNA mRNA upstream 35476 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_01829156_01835147.mRNA mRNA upstream 91057 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01718700_01722248.mRNA mRNA upstream 203946 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_01681164_01706159.mRNA mRNA upstream 219825 1681164 ~ 1706397 (+) True CI01000304_01681164_01706159
CI01000304_01392985_01399147.mRNA mRNA upstream 527069 1392985 ~ 1399153 (+) True CI01000304_01392985_01399147
CI01000304_02136252_02167869.mRNA mRNA downstream 209692 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
CI01000304_02206338_02219356.mRNA mRNA downstream 279778 2206338 ~ 2219642 (+) True CI01000304_02206338_02219356
CI01000304_02229520_02235812.mRNA mRNA downstream 302579 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
CI01000304_02236583_02240921.mRNA mRNA downstream 309807 2236367 ~ 2241608 (+) True CI01000304_02236583_02240921
CI01000304_02254859_02262580.mRNA mRNA downstream 327334 2253894 ~ 2264078 (+) False CI01000304_02254859_02262580
TU480282 other upstream 1050973 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1361771 558092 ~ 564451 (+) True G418059
TU480131 other upstream 1698369 226703 ~ 227853 (+) True G417987
TU481280 other downstream 165934 2092494 ~ 2093678 (+) True G418981
TU482914 other downstream 2376776 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 3246663 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4314673 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5426089 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032

Expression Profile