RNA id: TU481732


Basic Information

Item Value
RNA id TU481732
length 1982
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G419370
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2095578 ~ 2097618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTACCGCCAGACCCGGAGATCGGCTGAATGGATTCGAAAACGGTAAAAATCAACTGTTTAACTCTAGGGGAGTTAGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAAGTTCACATCCCCTTGTTTTTGAACTGGAATTTAAGGGTGTGTTTACACTGGTAGGTTTGGTTTGATTAAAACAAACTCTTGTGCGATTGCTCTGTTAATGCGGTTCATTTGAATAAGTGTGAACGCTGCCATCCGAACCCTGGTGCACACCAAACAAGTGGACAGAGACCCCTGAAAAGGTGGGACTTGAACCAAATGAACTCTGGTGCAGTTCGACTGAAATATGAATGCAACATGGACCAAAGACATGTAACTGAACCAAAAACAGTTTGTGATGTCACAAGATGCGACCCTTAAAGGGGTATTCCTGTTTTTTCTCGTCATAGTCGCGATGTTGCCCATTACAGTTCAGTACAGGCATCAGAAACGCATCTCCTTGCAGTAAGTTTTCGTTTGTGTGTAACAAAGGAATTCCTGCTGCTGTTTTGACTCCTTTACACGTTTTATAAGCTCTTCACGAGTTCTCAGCTGGTAAAAATACCATCATATGTACAAGCACATACAACGACCGCATTTAGCCCAGCACACAGCATTGTTTTAGATGTTCGGTAAGTTCCATTTACATTGAAAAATAATGGAAAAGTAGTGCAGTGGAATGAAGAAACGTGTTCTGTGTGAATGGCCCCTTAGAATGTTACAGCTAGATGCTTAGCAACAGACAGCCAATCACATGCCTCATATTCACATGCTTTGGAGAGTCATGGAAAAAACATTGTATAAACAGTAGTTACAGCATTTAAGTGGAAAATATCAAATGGTGACAGAAAACGCTTCAGTTGAAGAAGAGTGAAGAAGAGGCCATTTCATTCTTACTTTTATAGTACGAAATGTCCATTGGGATAAACTTTAGATGGTAATGTATAATATGAGGATGTTCAATACTAGAGCCTTTATGTAAACAAGTCGCATGCAACGTTTATCCAAACAGTGACACTGACACTGCAAATATGCAAATAAAGACGTTAACCCAGGGTTTAGGAATGTACAGTGTGAAACAGCAATTTATGAATACCCAGGATTAATTAATTAGATTAACCCTGGGTAAATTATGAGCAGTGTGAAATGTGAAGCAAGATAACCCAGGATTCCCTTTACTCTGGGTTTAGTATCACCCAAGGTTGACTATTTCAAGTGTGAAAAGCAAAACTAGCACCCCCTGATGGTAGGAAAGAAAATCAGCCCTATCATTAAAACCATGTGCAGGGCATGGCACTGTTACAGTTGTTGCTTGTCTTGAAAAAGGCAGTTGCTAACAAGTGTCTAAGGGGTCGTTTACATGACACCATTTGACACCACTAAAATTGCACAAGTTTTTGAAAACTATACCATTATCGTCTTTGTGTAAACTACAAAAATGCAAATTTGTGAAAACTGTGATGTCGTGCATGTGTATTATGTGTTCAGTCTATAGGCGGGTAATGTTTCTTTACAAACTGACTTTGCCAACTACTGGTCTGGAATGAATAATACAGCATTTTTAGTTATTTTCTGCTGATCAGTACATCGTTGTCATGTAAACATGCGCTAAAGGGGACTACAGAGGTTGTTGGGGACATTAAACATCATCAGCTGAACAGGTTAAACTCTCAATGTTTTTAATAAAGACTGAAAGAGTTGTTGGAAGCTTAATGGTGGTGACGTTGAAGTCATGTGACCGTAGTGTAGTTTGTTTAGCTTTAGCTTTTTAATTCTGTGATTGCATTTAAGAATTATACGCTTTTATTGGTCACAGAGCTTATTTTATGCAATATTCCAAAAGCCAATGGAAAAATCCTATTGGGTTTTTGTTGAGGGAACTAGAGTGATGCTAACTTACAGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481764 lncRNA downstream 27822 2067243 ~ 2067756 (-) True G419402
TU481712 lncRNA downstream 137412 1927480 ~ 1958166 (-) True G419358
TU481749 lncRNA downstream 192134 1902641 ~ 1903444 (-) True G419387
TU481657 lncRNA downstream 199168 1877252 ~ 1880008 (-) True G419327
TU481651 lncRNA downstream 335281 1759956 ~ 1760297 (-) True G419324
TU481722 lncRNA upstream 4839 2102457 ~ 2161900 (-) True G419363
TU481697 lncRNA upstream 134137 2231755 ~ 2236106 (-) True G419353
TU481705 lncRNA upstream 138687 2236305 ~ 2239684 (-) True G419356
TU481688 lncRNA upstream 142451 2250825 ~ 2251046 (-) True G419350
TU481780 lncRNA upstream 320865 2418483 ~ 2418785 (-) True G419418
CI01000304_02066780_02080386.mRNA mRNA downstream 15192 2066551 ~ 2080386 (-) True CI01000304_02066780_02080386
CI01000304_02061451_02063273.mRNA mRNA downstream 32117 2061260 ~ 2063461 (-) True CI01000304_02061451_02063273
CI01000304_02041045_02041482.mRNA mRNA downstream 54081 2040930 ~ 2041497 (-) True CI01000304_02041045_02041482
CI01000304_01977963_01994161.mRNA mRNA downstream 101417 1977858 ~ 1994161 (-) True CI01000304_01977963_01994161
CI01000304_01975851_01976768.mRNA mRNA downstream 118211 1975666 ~ 1977367 (-) True CI01000304_01975851_01976768
CI01000304_02131491_02133762.mRNA mRNA upstream 33682 2131300 ~ 2135561 (-) False CI01000304_02131491_02133762
CI01000304_02184710_02202104.mRNA mRNA upstream 86785 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02220391_02227729.mRNA mRNA upstream 122267 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02244094_02244588.mRNA mRNA upstream 146101 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02299398_02304171.mRNA mRNA upstream 201525 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
TU481692 other upstream 131766 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 131766 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 164884 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 165120 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 165474 2263092 ~ 2265185 (-) False G419354

Expression Profile