RNA id: TU481722


Basic Information

Item Value
RNA id TU481722
length 3462
lncRNA type read_through
GC content 0.35
exon number 2
gene id G419363
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2102457 ~ 2161900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCTCCAATTGGTGCTCCAGGCGCACCTTCCATGTTAACCTGAGGCATGTTGGGATTTCTGCTTGGGGGTCCCAGTGGCTGCTGTTGGATGGGGGTGAAGGTTGTTGGGCCCACATGCTGATCTGGAACCTGTTGTTGTTGCGGTTGAAGGGTCTGCATACTTTGGGCAGCAGGGACCTGAGGTTCCCCTAGAGGGGCCATAATGGGTGCTGTAATGGGTGCAGGTGGAGTGAAGTTATCTGGAATCTGGAGACCAAAAACAGGGAATGTTTTCTTGAAATAAAGGCAAATCCATGTACATTATGAGCAAGACAATCTTCAGTCAAACCCACCTTCTTCTTTTTAGGTGCTCTGTTGAGTGTGGGGGGATCGTTCCAGCCATTCTGAGGTCCTGCAGCGGAACAAAAGAGATCTTCTCATTTTAGATTTCAGGTGGTGGCACTGCACTGTCCAACCTGCTGTACCTCTGAGAGGCTAATGCCAGGTGGACATCTGTTTAAAGGGATAGGTTCACCCAAAAATGAAAACTCTGTCATCATTTACTTACCCTCAAATTGCTCCAAACCACAGAAACCAGGAAGAAATCGTTTTGATTTCACCTGCTCGTCCCAGTTCCTGTTTCCCTGCCGAGTTGAGAGTTACCCGTTTCTACATTTCTCTTTGTTTTTTATATTATCCGTTAAGTCCACTTAAAATGTTAGTCAAGGTTTTTTTTTCTGGCATAAAACATTCATAATATTGTTCTTTCGTGACCATTTTCAGTCCCACTTTATATTAGGTTTCTTTAACTAGTGTGCACTTACATGATAAAATTAAGCTTTTGATACCACATGTTGTTCTGCCAGATTGGCATTTGCAGCTATTGAGGTTGTGATACGGGTAGGGTAGGCCGGAGGATTTCGGTTGGGGTACATCAGCTGTGTAATTACATGCAGTTATTTAAAGGAAAGTACAGTGTAAAAACATGTATGTAAACAAGATAAAGTATATTGATCAAATGTTCTGTGTAAATACTCAAAGAAAGTGGGTCGCTATTTTCCTTTCTCTCTGGCCAAAATTCATTTTAAATATGCTAAAAATACATTACCGGTCAAAAGTTTGGAATAATTATGATTTTTTTATGTTTTTGAAAGAAGCCCCTTCTGCTCACCAAAGCTGCATTTATTTGATCAAAAATACATTAAAAATAATATACTTTATATAATATAATATAATATAAGTAATACTATGAAATATTATTACAATTTAAAATAACTGTTTTCTATGTGAATCTAATAAATGTAATTTATTCCTGTGTTCAAAGCTGAATTTTCATCATCATTACTCCAGTCTTCAGTGTCACTCTCAAGGATCAAAACTTTTAAACTGTAATAATATTTCACAATATTACTATTTCTACTGTATTTTTGATCAAATAAATGCAAAATATATTTTTCAAATTAACAATATATTGAGTTTAAATCTTTAGAAAATATATTTCCAATCTTAAAATACATTTTCAGTAAATGCAAAACATATTTTAAAATATATTTTGGACAATATATATATATATATTGAGATATTAGAAAATATTTTTACACACACAAAGCATTATGAGTAGGGCTGCACGATATATGAAAATTATCAAAATATCGCACATGTATGTATCGCAATATGCACGTTGCATTGGCTTGCGATAACTGCATGATTTTAATACTCCAAAAGATAACAAAACTTCCACATTTTAGGTCGCTGCAGAGAGTAGACTGGACACATGACTGTTACATGCATGTGACATACTTAATTTTATTAAATGCAATAAGCGAAGTATTCACGCACACAACAAGCCGCCTCTCGGATAGTGTGTGATCCCGAATTCGGATCTCTTCAGCTTACAGCAGATACACACAAAATTATGTCAAAATGCCCATCCTGGCGAGTATTCATGTAAACACAGTCAGTTATAATCTTAATTGGAGTAAATATAACTATATATTGGATCCGTGCAGCTCTTAAAGTGACAGCAGCCTAATAAACCTGCTGCTGTCTGTGTGCTTAATGTTAATCAAACAACAAAAGACAAAGAGAAAATCCCTCATTGCTCTTGACTGAACAACTTTTGTAGCTTTAATAAGAATCAGTGTATATTTAATTCATACAGTGAAGACTAAGCAGTGTTTTATTTTTACATTTGAATATTCAATTTCTGTTGAATAACTTGCCATTTTTTGTTAAATAAACCCATTGTAGGCCTACCTGAAACCCTAAACCCCCTGGTTTACACTGACGTTAAAATGACACCTACTTTTTATGTAAACACTGCTGTTCACTTTCAGAAGTTAGGGATGCTTTCTTCTCTCAAAAAGAATGTGAAACATGTAAGTTGGTTATATCATTTTCAGTTTTTACATTTATTTAAATATAATTAAAATTTATTTTACACACTTTATCGTATTGCATATCGAATATTGCATTAAGGAGTTATCATGCAGCTATAATTGTGTGTGTGTTTGATGAGTCTCTTACCCTTGTCTTGAGTCTCAGCTCTATGTGGATGTGAATGTTTTTGCCCCAACCATTTTTAATCAACACACTTCCATTGAGACGTCAGCTGTCACAACATAGTAATGTCAGAATTTGTCTCTGCTCAGTTAATAAAGCAGACAAGATTTATAACAACAGAAATACTTTAGCCCCAACAGGCGTACCATGACATCACATAACCATAGAAGGATTTACGCTCAGAGCCCCTCTTTGATGAAATAGCTGGTGTTAAAGAATGTGTGGATGTTGTTATTCAAAGGTGTTTATATTGTTGCATGTCAATGAATAAAGGCTGACCAGCATGAAATGTAGTAAGGAGGGTAGTTTCAGTAAATGAAGGTCAATAAGAATCTACTGAAGGAAATGTAACCGTCTAAGCAGTATTTTTTGTTTGGTGACATTTTCTCTAAACTCATAAACAGTCAATATGTTGAATTGAGTTTGGTTTGACTGAAGTTCGGTATTGGGACAAGCTGAGAGATTTGCCACCTTTGGCCTTTTAAGCACGCAAGGAATTTCTGAGACTTGTTATTACAGGCACTTGTGAAGTTCGACTGACCGGTGACTGAAATTCGTGCCCATATTTTCTACTGCATTTTAATACTGATGTATTACTGTAAGTTTCCCTAATAGCTACATCCTGCAGTTTCCCTGCATACGTCACCAGAGAGAAGTCTGATGTTTTCATTGGAAGATAGTTATGAAATTTTTGTTAAACATTACAAGGGCAAAACATTTTAAAAAATGGATCAAATGCACAGATTAATTCTTCACAATAAAATCCATAAACATGCAATTAGAAAATAAATAGGATATATTTTCATTTCATGCCAACTTTAAAAAAATTAGCTGAATCTTGTATAACTTAAAAAATTAAGTTGAAATTGGTTAAATTATAATGTTATTTTGAGTTAAAGTAATGGAAAAACATATGTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481732 lncRNA downstream 4839 2095578 ~ 2097618 (-) True G419370
TU481764 lncRNA downstream 34701 2067243 ~ 2067756 (-) True G419402
TU481712 lncRNA downstream 144291 1927480 ~ 1958166 (-) True G419358
TU481749 lncRNA downstream 199013 1902641 ~ 1903444 (-) True G419387
TU481657 lncRNA downstream 206047 1877252 ~ 1880008 (-) True G419327
TU481697 lncRNA upstream 69855 2231755 ~ 2236106 (-) True G419353
TU481705 lncRNA upstream 74405 2236305 ~ 2239684 (-) True G419356
TU481688 lncRNA upstream 78169 2250825 ~ 2251046 (-) True G419350
TU481780 lncRNA upstream 256583 2418483 ~ 2418785 (-) True G419418
TU481784 lncRNA upstream 259243 2421143 ~ 2421440 (-) True G419422
CI01000304_02066780_02080386.mRNA mRNA downstream 22071 2066551 ~ 2080386 (-) True CI01000304_02066780_02080386
CI01000304_02061451_02063273.mRNA mRNA downstream 38996 2061260 ~ 2063461 (-) True CI01000304_02061451_02063273
CI01000304_02041045_02041482.mRNA mRNA downstream 60960 2040930 ~ 2041497 (-) True CI01000304_02041045_02041482
CI01000304_01977963_01994161.mRNA mRNA downstream 108296 1977858 ~ 1994161 (-) True CI01000304_01977963_01994161
CI01000304_01975851_01976768.mRNA mRNA downstream 125090 1975666 ~ 1977367 (-) True CI01000304_01975851_01976768
CI01000304_02184710_02202104.mRNA mRNA upstream 22503 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02220391_02227729.mRNA mRNA upstream 57985 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02244094_02244588.mRNA mRNA upstream 81819 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02299398_02304171.mRNA mRNA upstream 137243 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02314977_02384157.mRNA mRNA upstream 153077 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
TU481692 other upstream 67484 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 67484 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 100602 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 100838 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 101192 2263092 ~ 2265185 (-) False G419354

Expression Profile