Item | Value |
---|---|
RNA id | TCONS_00019678 |
length | 1977 |
RNA type | mRNA |
GC content | 0.46 |
exon number | 9 |
gene id | XLOC_009861 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 21425114 ~ 21441226 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0042471 | ear morphogenesis | biological_process |
GO:0042472 | inner ear morphogenesis | biological_process |
GO:0009889 | regulation of biosynthetic process | biological_process |
GO:0008219 | cell death | biological_process |
id | description |
---|---|
ZDB-GENE-030131-7662 | Acts upstream of or within inner ear morphogenesis and regulation of biosynthetic process. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart tube; hematopoietic system; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 5 and sensorineural hearing loss. Orthologous to human GSDME (gasdermin E). |
ensembl_id | ENSDART00000182869 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00021921 | lncRNA | upstream | 284008 | 21141048 ~ 21142516 (+) | True | XLOC_009859 |
TCONS_00019662 | lncRNA | upstream | 539100 | 20871044 ~ 20887424 (+) | False | XLOC_009850 |
TCONS_00019660 | lncRNA | upstream | 546319 | 20871015 ~ 20880205 (+) | False | XLOC_009850 |
TCONS_00019663 | lncRNA | upstream | 552024 | 20873723 ~ 20874500 (+) | True | XLOC_009850 |
TCONS_00021708 | lncRNA | upstream | 731007 | 20688916 ~ 20695517 (+) | True | XLOC_009848 |
TCONS_00021922 | lncRNA | downstream | 193461 | 21634387 ~ 21634836 (+) | True | XLOC_009862 |
TCONS_00019681 | lncRNA | downstream | 258069 | 21698995 ~ 21703320 (+) | False | XLOC_009863 |
TCONS_00019683 | lncRNA | downstream | 258163 | 21699089 ~ 21703817 (+) | False | XLOC_009863 |
TCONS_00019684 | lncRNA | downstream | 258169 | 21699095 ~ 21703511 (+) | False | XLOC_009863 |
TCONS_00019690 | lncRNA | downstream | 360793 | 21801719 ~ 21802475 (+) | True | XLOC_009864 |
TCONS_00019675 | mRNA | upstream | 7749 | 21330634 ~ 21418775 (+) | False | XLOC_009860 |
TCONS_00019674 | mRNA | upstream | 7749 | 21330634 ~ 21418775 (+) | True | XLOC_009860 |
TCONS_00019673 | mRNA | upstream | 7869 | 21242491 ~ 21418655 (+) | False | XLOC_009860 |
TCONS_00019672 | mRNA | upstream | 371388 | 21016820 ~ 21055136 (+) | True | XLOC_009858 |
TCONS_00019671 | mRNA | upstream | 448818 | 20947439 ~ 20977706 (+) | True | XLOC_009857 |
TCONS_00019679 | mRNA | downstream | 258054 | 21698980 ~ 21706709 (+) | False | XLOC_009863 |
TCONS_00019680 | mRNA | downstream | 258058 | 21698984 ~ 21719111 (+) | False | XLOC_009863 |
TCONS_00019685 | mRNA | downstream | 258286 | 21699212 ~ 21741877 (+) | False | XLOC_009863 |
TCONS_00019686 | mRNA | downstream | 297268 | 21738194 ~ 21745336 (+) | True | XLOC_009863 |
TCONS_00019687 | mRNA | downstream | 348777 | 21789703 ~ 21804638 (+) | False | XLOC_009864 |
TCONS_00019667 | other | upstream | 513040 | 20913413 ~ 20913484 (+) | True | XLOC_009854 |
TCONS_00019658 | other | upstream | 921659 | 20496773 ~ 20504865 (+) | True | XLOC_009846 |
TCONS_00019655 | other | upstream | 1122249 | 20296823 ~ 20304275 (+) | True | XLOC_009845 |
TCONS_00019651 | other | upstream | 1255696 | 20167834 ~ 20170828 (+) | True | XLOC_009843 |
TCONS_00019642 | other | upstream | 1721986 | 19704424 ~ 19704538 (+) | True | XLOC_009838 |
TCONS_00019682 | other | downstream | 258080 | 21699006 ~ 21703679 (+) | False | XLOC_009863 |
TCONS_00019718 | other | downstream | 1956875 | 23397801 ~ 23399160 (+) | False | XLOC_009882 |
TCONS_00019728 | other | downstream | 2166305 | 23607231 ~ 23607352 (+) | True | XLOC_009889 |
TCONS_00019735 | other | downstream | 2396994 | 23837920 ~ 23854611 (+) | False | XLOC_009892 |
TCONS_00019751 | other | downstream | 2519945 | 23960871 ~ 23962929 (+) | False | XLOC_009898 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000016_08553934_08565167.mRNA | True | 2589 | mRNA | 0.42 | 9 | CI01000016 | 8552843 ~ 8565246 (+) |
bowfin (Amia calva) | TU121759 | False | 1195 | TUCP | 0.59 | 4 | CM030132.1 | 8951793 ~ 8953675 (+) |
mexican tetra (Astyanax mexicanus) | TU121759 | True | 1135 | lncRNA | 0.52 | 7 | NC_035906.1 | 13002722 ~ 13016527 (+) |