RNA id: TU481308


Basic Information

Item Value
RNA id TU481308
length 208
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G419006
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2228641 ~ 2228848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATTAAGGGATAATGTAGGCTACAGTCAGCCTACTGTCATTTTAAAGTCATTTTTAAAAACACTGAAATGTTAAAATATTTTTACAAGCTATGCAGGAACATTTTAGGCTTTTAATCATTTTAATTTAATGAAAGACTTATTTATTTATTTAACAGACAGTAATAACGGATATTGATTTTTGCTAAATTTTGAGCGCTTGAAATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481303 lncRNA upstream 41222 2186731 ~ 2187419 (+) True G419001
TU481299 lncRNA upstream 43848 2180561 ~ 2184793 (+) True G418998
TU481279 lncRNA upstream 142113 2086310 ~ 2086528 (+) True G418980
TU481191 lncRNA upstream 161778 2059352 ~ 2066863 (+) True G418909
TU481166 lncRNA upstream 302081 1926222 ~ 1926560 (+) True G418886
TU481340 lncRNA downstream 25148 2253996 ~ 2254210 (+) True CI01000304_02254859_02262580
TU481328 lncRNA downstream 36918 2265766 ~ 2327739 (+) True G419019
TU481395 lncRNA downstream 194525 2423373 ~ 2423578 (+) True G419081
TU481396 lncRNA downstream 195129 2423977 ~ 2424792 (+) True G419082
TU481397 lncRNA downstream 196212 2425060 ~ 2425412 (+) True G419083
CI01000304_02206338_02219356.mRNA mRNA upstream 8999 2206338 ~ 2219642 (+) True CI01000304_02206338_02219356
CI01000304_02136252_02167869.mRNA mRNA upstream 60178 2136252 ~ 2168463 (+) True CI01000304_02136252_02167869
CI01000304_01877287_01890608.mRNA mRNA upstream 337895 1875390 ~ 1890746 (+) True CI01000304_01877287_01890608
CI01000304_01829156_01835147.mRNA mRNA upstream 393476 1829156 ~ 1835165 (+) True CI01000304_01829156_01835147
CI01000304_01718700_01722248.mRNA mRNA upstream 506365 1718328 ~ 1722276 (+) True CI01000304_01718700_01722248
CI01000304_02229520_02235812.mRNA mRNA downstream 291 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
CI01000304_02236583_02240921.mRNA mRNA downstream 7519 2236367 ~ 2241608 (+) True CI01000304_02236583_02240921
CI01000304_02254859_02262580.mRNA mRNA downstream 25046 2253894 ~ 2264078 (+) False CI01000304_02254859_02262580
CI01000304_02267341_02290220.mRNA mRNA downstream 38493 2267341 ~ 2290283 (+) True CI01000304_02267341_02290220
CI01000304_02558750_02584199.mRNA mRNA downstream 329902 2558750 ~ 2585195 (+) True CI01000304_02558750_02584199
TU481280 other upstream 134963 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 1353392 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1664190 558092 ~ 564451 (+) True G418059
TU480131 other upstream 2000788 226703 ~ 227853 (+) True G417987
TU482914 other downstream 2074488 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 2944375 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 4012385 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 5123801 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 5255293 7484141 ~ 7484688 (+) True G421435

Expression Profile