RNA id: TU481701


Basic Information

Item Value
RNA id TU481701
length 1186
RNA type TUCP
GC content 0.35
exon number 5
gene id G419354
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2262502 ~ 2266241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAACAAGACTCTTGCATGATGGGGACACGCTTGAAGGTGCTGCGGGTGTTCAAAGATCTGCACAAGACAAGAAGAGATGTTTTTAAAGATGATGGCAGAGCTCTGACAGCTGCCAGGTTAAAAATCAATGAAGAATTCAAAAAGAACAAGAATGAAACGTCAGAAGAAAATATTAAAGAGATGCTTAAAATGGCCCGATCAGTTGAGACCATCCTTCGTGAAAGTGTGATACAGGTTGAGCATGTGGAGGAAAATAAAATCTTGTTGCGGCCCCGCAAGAGTCTCCTGCTGGAAAATGTGCCGTACTGTGATTCACCCAGGAAAAAGACATGATCCTGATTTACTCCCACTGAAACCAATCACTTTTCTTCAGTGTTTTTCATATGCGACAGACCAAGGCACGTCTCTGATATAGGACAAGGAAGCAATCATTCATTCTTCATTTCCACTGGAATATCACACAGATGCCATAATAACATAACTATAATAACTTATATGTTGGTTCAAAGCTGATGTGATTGTGTTGAATTAAATGCTATGAATTGCCATATTGTAAATAGTATTTGTTTGGCTGAGTGTTGAATAAATTGTAAAAAATGTCTCTTTCAACATAATTGCAGTTCTTTTTTGGGTACAGGACAGATATACACTACATTTTAAGTAAAACCTAATAAATAAGTGGTAATATATTTTGAATACTCTTTAAAATGAGTAGACACTAGTGCTGGTAAACATGAAAGAAGTGTTATTAATTGACAATTGACTTGGTATACATGAAAAAAGGACAATTATGTAATAACTAATAAGGTACCATTAAAAGGGGTTTCACCCCTTCACAGTCATCACAGTTATTATATGATCCACAAGATGTAATAATATAAAAAAAATCACATTTTCCACATAATTCATTAACTAACTGAATTCTATTAATTCATATTAAACATGCTCCATTCTAATTTACTGTCTAGAATATGAAAACATGTCTATAAATTAAACAATTTATAAAGTCTTGATCACAGTAAAGCATTTAGCGCAAATACTATCATAATCGTTCAAAATTGCAAGGAATGTAGAGGCAATTCTAATTCTTTGTGTCACAGAATATCAGAAGATGAGTTTCTTCGGCTTTTCCCAAGGAAATTCCTCTCGTCCAAAGTGTCCATAGCAGGCTGTTTTCTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481688 lncRNA downstream 11456 2250825 ~ 2251046 (-) True G419350
TU481705 lncRNA downstream 22818 2236305 ~ 2239684 (-) True G419356
TU481697 lncRNA downstream 26396 2231755 ~ 2236106 (-) True G419353
TU481722 lncRNA downstream 100602 2102457 ~ 2161900 (-) True G419363
TU481716 lncRNA downstream 130888 2088124 ~ 2105659 (-) True G419360
TU481780 lncRNA upstream 153298 2418483 ~ 2418785 (-) True G419418
TU481784 lncRNA upstream 155958 2421143 ~ 2421440 (-) True G419422
TU481789 lncRNA upstream 168164 2433349 ~ 2433582 (-) True G419427
TU481790 lncRNA upstream 173337 2438522 ~ 2438725 (-) True G419428
TU481792 lncRNA upstream 175328 2440513 ~ 2440798 (-) True G419430
CI01000304_02244094_02244588.mRNA mRNA downstream 17914 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02220391_02227729.mRNA mRNA downstream 34184 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02184710_02202104.mRNA mRNA downstream 60093 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02131491_02133762.mRNA mRNA downstream 126941 2131300 ~ 2135561 (-) False CI01000304_02131491_02133762
CI01000304_02066780_02080386.mRNA mRNA downstream 182116 2066551 ~ 2080386 (-) True CI01000304_02066780_02080386
CI01000304_02299398_02304171.mRNA mRNA upstream 33958 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02314977_02384157.mRNA mRNA upstream 49792 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
CI01000304_02595522_02611332.mRNA mRNA upstream 330337 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_02694838_02711363.mRNA mRNA upstream 429475 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
CI01000304_02900497_02900924.mRNA mRNA upstream 634614 2899799 ~ 2902102 (-) True CI01000304_02900497_02900924
TU481692 other downstream 26396 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 1998560 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 2396631 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 2406187 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 4212266 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 4212266 6477451 ~ 6479033 (-) False G422250

Expression Profile