RNA id: TU481395


Basic Information

Item Value
RNA id TU481395
length 206
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G419081
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2423373 ~ 2423578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCCAGACTGATGGCAGCAACAATTGCTTCTTTAAGATCATTGCTGATTTCTTTCCTCCTTGGCATTGTGTTAACACATACTTGAAGGGTCCAGACACCCAAACTGCAGCTTTTATAGAGGTGATCACACACTTGCTAGTGATCAGTTAATCAAAGACATTTGATTAGCAGTACCTGACTGTTATTTACCCTCTTAAATTCCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481328 lncRNA upstream 95634 2265766 ~ 2327739 (+) True G419019
TU481340 lncRNA upstream 169163 2253996 ~ 2254210 (+) True CI01000304_02254859_02262580
TU481308 lncRNA upstream 194525 2228641 ~ 2228848 (+) True G419006
TU481303 lncRNA upstream 235954 2186731 ~ 2187419 (+) True G419001
TU481299 lncRNA upstream 238580 2180561 ~ 2184793 (+) True G418998
TU481396 lncRNA downstream 399 2423977 ~ 2424792 (+) True G419082
TU481397 lncRNA downstream 1482 2425060 ~ 2425412 (+) True G419083
TU481403 lncRNA downstream 10386 2433964 ~ 2434172 (+) True G419089
TU481406 lncRNA downstream 16383 2439961 ~ 2440175 (+) True G419092
TU481427 lncRNA downstream 60754 2484332 ~ 2484602 (+) True G419113
CI01000304_02267341_02290220.mRNA mRNA upstream 133090 2267341 ~ 2290283 (+) True CI01000304_02267341_02290220
CI01000304_02254859_02262580.mRNA mRNA upstream 159295 2253894 ~ 2264078 (+) False CI01000304_02254859_02262580
CI01000304_02236583_02240921.mRNA mRNA upstream 181765 2236367 ~ 2241608 (+) True CI01000304_02236583_02240921
CI01000304_02229520_02235812.mRNA mRNA upstream 187169 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
CI01000304_02206338_02219356.mRNA mRNA upstream 203731 2206338 ~ 2219642 (+) True CI01000304_02206338_02219356
CI01000304_02558750_02584199.mRNA mRNA downstream 135172 2558750 ~ 2585195 (+) True CI01000304_02558750_02584199
CI01000304_02672677_02672967.mRNA mRNA downstream 249042 2672620 ~ 2673448 (+) True CI01000304_02672677_02672967
CI01000304_02810127_02814735.mRNA mRNA downstream 386549 2810127 ~ 2815076 (+) True CI01000304_02810127_02814735
CI01000304_02993734_03052509.mRNA mRNA downstream 570156 2993734 ~ 3052509 (+) False CI01000304_02993734_03052509
CI01000304_03127839_03154603.mRNA mRNA downstream 703015 3126593 ~ 3154797 (+) True CI01000304_03127839_03154603
TU481280 other upstream 329695 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 1548124 872670 ~ 875249 (+) True G418116
TU480224 other upstream 1858922 558092 ~ 564451 (+) True G418059
TU480131 other upstream 2195520 226703 ~ 227853 (+) True G417987
TU482914 other downstream 1879758 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 2749645 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 3817655 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 4929071 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 5060563 7484141 ~ 7484688 (+) True G421435

Expression Profile