RNA id: TU481802


Basic Information

Item Value
RNA id TU481802
length 238
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G419440
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2478262 ~ 2478499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATTATACTGAAAAATCTGGTCAGGGTATTCTTCATAAACCCTTTTAGCTTCATGGAATGAAGAAAGTTTGATGTGGATTGACATGAGAGTGAGAAAATAATGACAATTTTCATTTTTGAAATGAAAAAGAAAAAAGAAAAAATTGAAAACAACTCAAGTCTCCAACTCAATATCTATACATTTATATATACACATTAGGGGTTCAGATTTCTCACGGTTTGGTTTGTATCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481792 lncRNA downstream 37464 2440513 ~ 2440798 (-) True G419430
TU481790 lncRNA downstream 39537 2438522 ~ 2438725 (-) True G419428
TU481789 lncRNA downstream 44680 2433349 ~ 2433582 (-) True G419427
TU481784 lncRNA downstream 56822 2421143 ~ 2421440 (-) True G419422
TU481780 lncRNA downstream 59477 2418483 ~ 2418785 (-) True G419418
TU481842 lncRNA upstream 70042 2548541 ~ 2549110 (-) True G419479
TU481860 lncRNA upstream 106906 2585405 ~ 2585713 (-) True G419497
TU481861 lncRNA upstream 109794 2588293 ~ 2589183 (-) True G419498
TU481862 lncRNA upstream 111468 2589967 ~ 2590299 (-) True G419499
TU481889 lncRNA upstream 159039 2637538 ~ 2637824 (-) True G419524
CI01000304_02314977_02384157.mRNA mRNA downstream 94105 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
CI01000304_02299398_02304171.mRNA mRNA downstream 173100 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02244094_02244588.mRNA mRNA downstream 233674 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02220391_02227729.mRNA mRNA downstream 249944 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02184710_02202104.mRNA mRNA downstream 275853 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02595522_02611332.mRNA mRNA upstream 117023 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_02694838_02711363.mRNA mRNA upstream 216161 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
CI01000304_02900497_02900924.mRNA mRNA upstream 421300 2899799 ~ 2902102 (-) True CI01000304_02900497_02900924
CI01000304_03158811_03160301.mRNA mRNA upstream 679994 3158493 ~ 3160301 (-) True CI01000304_03158811_03160301
CI01000304_03214897_03241215.mRNA mRNA upstream 734984 3213483 ~ 3241215 (-) True CI01000304_03214897_03241215
TU481702 other downstream 212021 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 212922 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 213077 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 213077 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 242156 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 1785246 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 2183317 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 2192873 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 3998952 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 3998952 6477451 ~ 6479033 (-) False G422250

Expression Profile