RNA id: TU482180


Basic Information

Item Value
RNA id TU482180
length 214
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G419783
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2963590 ~ 2963803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAGCACTCAACATGATTTCAAAAACAACACATCCCAGCGATAGATCGCCTATTATTTAACACAAACGAATGAATTGCTAATCATCTAGAGATGTTTCTTTTGTATTAGTATATATCCGTGCCGCGAGGTGTTTCAAAAAGTGGTGGGGACAATATCGACCCAGGCAAAAAGTGGTGGGGATATGTCCCACCCGCAAATTACGCCTATGCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482174 lncRNA downstream 21643 2941699 ~ 2941947 (-) True G419777
TU482148 lncRNA downstream 69101 2889285 ~ 2894489 (-) True G419756
TU482017 lncRNA downstream 159802 2803579 ~ 2803788 (-) True G419640
TU481889 lncRNA downstream 325766 2637538 ~ 2637824 (-) True G419524
TU481862 lncRNA downstream 373291 2589967 ~ 2590299 (-) True G419499
TU482238 lncRNA upstream 115563 3079366 ~ 3079602 (-) True G419840
TU482240 lncRNA upstream 121616 3085419 ~ 3086625 (-) True G419842
TU482644 lncRNA upstream 423875 3387678 ~ 3389213 (-) True G420221
TU482569 lncRNA upstream 456119 3419922 ~ 3478109 (-) True G420150
TU484052 lncRNA upstream 795615 3759418 ~ 3759745 (-) True G421465
CI01000304_02900497_02900924.mRNA mRNA downstream 61488 2899799 ~ 2902102 (-) True CI01000304_02900497_02900924
CI01000304_02694838_02711363.mRNA mRNA downstream 252088 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
CI01000304_02595522_02611332.mRNA mRNA downstream 352258 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_02314977_02384157.mRNA mRNA downstream 579433 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
CI01000304_02299398_02304171.mRNA mRNA downstream 658428 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_03158811_03160301.mRNA mRNA upstream 194690 3158493 ~ 3160301 (-) True CI01000304_03158811_03160301
CI01000304_03214897_03241215.mRNA mRNA upstream 249680 3213483 ~ 3241215 (-) True CI01000304_03214897_03241215
CI01000304_03268621_03269674.mRNA mRNA upstream 304818 3268621 ~ 3270242 (-) True CI01000304_03268621_03269674
CI01000304_03305219_03313206.mRNA mRNA upstream 341416 3305219 ~ 3313398 (-) True CI01000304_03305219_03313206
CI01000304_03398119_03398652.mRNA mRNA upstream 434236 3398039 ~ 3400370 (-) True CI01000304_03398119_03398652
TU481702 other downstream 697349 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 698250 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 698405 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 698405 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 727484 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 1299942 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 1698013 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 1707569 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 3513648 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 3513648 6477451 ~ 6479033 (-) False G422250

Expression Profile