RNA id: TU482204


Basic Information

Item Value
RNA id TU482204
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G419806
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3084123 ~ 3084345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGAATTGTCAAAACATCTCTCAAAATGCGTGCCACAAATGTGAAAAATGCAGAAAATCGAACCGGATCCGAATTTTTTTTATGACGGACGAAAGTTTCGGAGGCAGTGTGTAAACATGATTGACACAACATGAGGTCGTATTTATTTGTTAATGTGTGAAAATTTCGGACGTGAATTTCGGACTCAGTGTGCAAAGGCCTTTACACCATCACAATTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482200 lncRNA upstream 6314 3077603 ~ 3077809 (+) True G419802
TU482186 lncRNA upstream 29132 3048746 ~ 3054991 (+) True CI01000304_02993734_03052509
TU482111 lncRNA upstream 142173 2941696 ~ 2941950 (+) True G419724
TU482024 lncRNA upstream 264862 2818941 ~ 2819261 (+) True G419647
TU482013 lncRNA upstream 283487 2800418 ~ 2800636 (+) True G419636
TU482206 lncRNA downstream 11360 3095705 ~ 3095938 (+) True G419808
TU482262 lncRNA downstream 85089 3169434 ~ 3306051 (+) True G419862
TU482278 lncRNA downstream 203056 3287401 ~ 3379400 (+) True G419875
TU482343 lncRNA downstream 297178 3381523 ~ 3381763 (+) True G419937
TU482346 lncRNA downstream 304832 3389177 ~ 3389441 (+) True G419940
CI01000304_02993734_03052509.mRNA mRNA upstream 31614 2993734 ~ 3052509 (+) False CI01000304_02993734_03052509
CI01000304_02810127_02814735.mRNA mRNA upstream 269047 2810127 ~ 2815076 (+) True CI01000304_02810127_02814735
CI01000304_02672677_02672967.mRNA mRNA upstream 410675 2672620 ~ 2673448 (+) True CI01000304_02672677_02672967
CI01000304_02558750_02584199.mRNA mRNA upstream 498928 2558750 ~ 2585195 (+) True CI01000304_02558750_02584199
CI01000304_02267341_02290220.mRNA mRNA upstream 793840 2267341 ~ 2290283 (+) True CI01000304_02267341_02290220
CI01000304_03127839_03154603.mRNA mRNA downstream 42248 3126593 ~ 3154797 (+) True CI01000304_03127839_03154603
CI01000304_03193646_03207372.mRNA mRNA downstream 109043 3193388 ~ 3208382 (+) True CI01000304_03193646_03207372
CI01000304_03261474_03267659.mRNA mRNA downstream 177129 3261474 ~ 3268074 (+) True CI01000304_03261474_03267659
CI01000304_03278369_03283013.mRNA mRNA downstream 191963 3276308 ~ 3283183 (+) True CI01000304_03278369_03283013
CI01000304_03353284_03357099.mRNA mRNA downstream 267396 3351741 ~ 3357564 (+) True CI01000304_03353284_03357099
TU481280 other upstream 990445 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 2208874 872670 ~ 875249 (+) True G418116
TU480224 other upstream 2519672 558092 ~ 564451 (+) True G418059
TU480131 other upstream 2856270 226703 ~ 227853 (+) True G417987
TU482914 other downstream 1218991 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 2088878 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 3156888 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 4268304 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 4399796 7484141 ~ 7484688 (+) True G421435

Expression Profile