RNA id: TU482278


Basic Information

Item Value
RNA id TU482278
length 2587
lncRNA type read_through
GC content 0.39
exon number 2
gene id G419875
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3287401 ~ 3379400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGGGAATAATAAAACAGCTTATGTTGTACAGAAAAATATACTATATACATTTACTGTGGACGCCTTTGTGTTCACCTTTCCCAGGCAACAGTAGTCCAATGTTACGCATCTCCCCAGTACATCTGGATTTGACACCATGCATGCAACATTATAAAAAAAAAGGCAAAGAGCAAATGGGAAATATACACATTTTTCTCCAAGAACTTGTCCTGCTTGAATTATATAGTCTCTCCATCCTGCCAGTAACAGATGATTGCTGATCGATTAGCTTGTTTCCTTTGGTTCGGTTTTCTGGAATCGTGCATCAGTTTCCTTCAGCGCGGGGTTGAATTTCTCTGATGCAAGACTTAGGTCAGTGTGGAGAGACTATAACTGCACATCAAGCCATTAATACACTGTTAAAGAGTCAGTTCACAGATGGAGTTATATGATAGAGGTCTAAAAATAAACAGCAATCAGATATTTTCGGCATGTTACAGTGTTCAGATGCTTTATTGAAGTGGTTCTCAACTGGTCACAACCCAAACAATGCTGAATGCATAAAGTGAGCTGCAACAAAACCATATAATTGTGCATATCGATTGGAATTAATTGGTATTTTAGTGAAAATTTGTCACTTGATAGATACTAGCAAAATTAGACAGATATGACCCAAACTGCATAAAATATGGGTTTATTTGCAATTAGGATAAACATAATTTGAGGGGCTCATTTTTATGGCTCCCAAGAGCACAGAAATGTTAATATTTTCTGTGCTGTTGGGCCTGTGCAATTTATAGTTATATTAATACATTTCAATGTTTGATTTTATTCATTTTTGTTTACTTTGTATGATAAACAATTTTGTACTGCATTGGGTGCCACATGAAGTCAAATGTAAAATCTGGGTCCTGGGGCAAATCCAGCTGAGAACCACCGATTTACTGAATGCTGATAATCATCATATAAATCAAATCAAAAATTTAGTCTAGAATAACATACCAACCAAATCTATACTCTTAACATGCGGGACAACAAGCAGGGAAGGAAGGAATATATGACCGACTAAATATTAAACCAAGAGTCTCAGTCTCAAATATGAATGACTGGCATTAGTTCAGAACTAAACACTATTTTTTTCTTAACATATCTGCATTTTTTTTTTTTTCAAAATTGCATTGGAAAGTGTTTTACAATGCATAGGTAATTCGGAGAATCAAAATCTATTTTAAAGGGTAATATCATTAGAGCACCGAACCCATAAGCCACTTTCAGTATAAATACTGCTGCTCTAAAAATACACAAACCATCTTGCTGGTGGAACAGAAACAGGCCAAAAAAAGGAACATAAAAAGGCAGAGTTTACAAGCAAATGGTGCAAAAATGCATGAAGAAATGCACAAAAAAAAAAAAAAAAAAATTCTGGCAAACAGTCATTTTTATGCCGGGTTCAGACTAGATATTTTTGTCTGTTGTGATATTCACTGTGTCAGATTATGCAATTTTGATTGTTGTGTCATGGACAAGAGACAAGTCAGACTACACATTGCTTCCCAACCAATCATCGCTTGCTGTCTTTAACATTGTGTGTGATGTCATAGAGAAGGCGGAACTAGCGACTGACTTCCGTAAACAAGAGTGTAAACAAACTACCGAAGCGGCGTGTTAGCTTAATACTAATTCCAGCACACACGGTTTCTGAAGCACCTCCGTTATCATTCGCCAAGTCTGAGCCTCAGACGCCACGCCCTCGGACCATTGGCTGTACGCTGCACACTTAACTGGAAACACTTCAGGATTTTTGAAGTCGTCATCTGATTGGTTGAATTCTACAGGATGTCCAGAAGACGTGTGTCGTCATCTTTAGTGGTCCACCTGGAAACAAAGATGCCATGACGCCAAACCCCACCATGGAAGAAGAACGCCGTCGTGTTTACAACTGTGACAATAAGCGCTTACCAGGATCATCTAAATGCTGGATTTTCAAAAGTATGTTAAGTACGTAAAGTTCACGATATAGACTCTTTAAAATATGTCAGAGAGTTTTACACACCGGTCTGTTTGGTCATCACTGTAGGGACATCAATGTCATTTTCATGTACATAAACATGATGCGGATGCTGTGATTGATTTTTTTACATGTCGGTCAGATGTCGTCTTGGATGGTCCTTAGCCAATAAAAAATCTGCTATGGAGTCCAGCTTTCATTGGCCAAAGACCGCCCAAGAGGACATTTGACTGACATGTCACGCAACCAATCTCAGTTCGTTTTGTTCCACATCAAGTTTGGGGCGTGAAAATGTCGATGTCCCTACAATAACAGACTGGCTTACATCTAATAAATTATTAACTCAAGAACATTGTGCAAATTTACTGCAACAATGGAGCCGTGAAATTCACATACTTTTGAAAATCCACGACGGCATTCTTCTTCCACAAGGGGGTTTGGCATCACGGCATTTGTTTCCAGGTGGACCATTACGGAACGTGACACACACGTCTCCCGGACATCCTGTAGAATTCAACCAACCAGATGACAACTTCGAAAATCTTGAAGTGTTTCCAGTTAAGTGTGCCATATGCATCAAACGTTCAGCCAACGGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482206 lncRNA upstream 191463 3095705 ~ 3095938 (+) True G419808
TU482204 lncRNA upstream 203056 3084123 ~ 3084345 (+) True G419806
TU482200 lncRNA upstream 209592 3077603 ~ 3077809 (+) True G419802
TU482186 lncRNA upstream 232410 3048746 ~ 3054991 (+) True CI01000304_02993734_03052509
TU482111 lncRNA upstream 345451 2941696 ~ 2941950 (+) True G419724
TU482343 lncRNA downstream 2123 3381523 ~ 3381763 (+) True G419937
TU482346 lncRNA downstream 9777 3389177 ~ 3389441 (+) True G419940
TU482520 lncRNA downstream 313300 3692700 ~ 3695368 (+) True G420104
TU482725 lncRNA downstream 364441 3743841 ~ 3744102 (+) True G420295
TU482731 lncRNA downstream 380097 3759497 ~ 3759761 (+) True G420301
CI01000304_03278369_03283013.mRNA mRNA upstream 4218 3276308 ~ 3283183 (+) True CI01000304_03278369_03283013
CI01000304_03261474_03267659.mRNA mRNA upstream 19327 3261474 ~ 3268074 (+) True CI01000304_03261474_03267659
CI01000304_03193646_03207372.mRNA mRNA upstream 79019 3193388 ~ 3208382 (+) True CI01000304_03193646_03207372
CI01000304_03127839_03154603.mRNA mRNA upstream 132604 3126593 ~ 3154797 (+) True CI01000304_03127839_03154603
CI01000304_02993734_03052509.mRNA mRNA upstream 234892 2993734 ~ 3052509 (+) False CI01000304_02993734_03052509
CI01000304_03615644_03617791.mRNA mRNA downstream 235533 3614933 ~ 3618408 (+) True CI01000304_03615644_03617791
CI01000304_03666156_03669795.mRNA mRNA downstream 286756 3666156 ~ 3670934 (+) True CI01000304_03666156_03669795
CI01000304_03975032_03978067.mRNA mRNA downstream 595632 3975032 ~ 3978545 (+) True CI01000304_03975032_03978067
CI01000304_03984177_03996203.mRNA mRNA downstream 604777 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_04170630_04190266.mRNA mRNA downstream 791230 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
TU481280 other upstream 1193723 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 2412152 872670 ~ 875249 (+) True G418116
TU480224 other upstream 2722950 558092 ~ 564451 (+) True G418059
TU480131 other upstream 3059548 226703 ~ 227853 (+) True G417987
TU482914 other downstream 923936 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 1793823 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 2861833 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3973249 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 4104741 7484141 ~ 7484688 (+) True G421435

Expression Profile