RNA id: TU482520


Basic Information

Item Value
RNA id TU482520
length 394
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G420104
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3692700 ~ 3695368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTATTGGACACAAGCAGAGGTAACAGTGACAACAGGTGAGTAGATTGTGGTTGTAGAGGTGAATGACGAATGAATGGGTGATAATACTGTCCTTTTGTGGTTTGCAGGTTGATGGCGGTGGCAGACTGGAGACAATGCTGGCGGATGACACTCACACACAGACTTGGAGCACACGAGGTAGCACGGAGACACAGGAGACAGGTAAGTAGCAATGGGAGTCCTTGAGGTAAGCATAGAGGTAAGTTCCTTGATGCGAACGAGACCGGACAATGTGACTGAGTGTGTGAGTGTCTTAAATAGTGCTCGTGATGAGTGTGCTGATGAGATGCAGGTGGCGGTGATTATTACTCAGGGGAAGGTGTGCGTTGTGATTGGTGGGTGCTGGAGCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482346 lncRNA upstream 303259 3389177 ~ 3389441 (+) True G419940
TU482343 lncRNA upstream 310937 3381523 ~ 3381763 (+) True G419937
TU482278 lncRNA upstream 313300 3287401 ~ 3379400 (+) True G419875
TU482262 lncRNA upstream 386649 3169434 ~ 3306051 (+) True G419862
TU482206 lncRNA upstream 596762 3095705 ~ 3095938 (+) True G419808
TU482725 lncRNA downstream 48473 3743841 ~ 3744102 (+) True G420295
TU482731 lncRNA downstream 64129 3759497 ~ 3759761 (+) True G420301
TU482750 lncRNA downstream 119925 3815293 ~ 3815758 (+) True G420319
TU482761 lncRNA downstream 138852 3834220 ~ 3834606 (+) True G420330
TU482765 lncRNA downstream 247084 3942452 ~ 4003768 (+) False G420333
CI01000304_03666156_03669795.mRNA mRNA upstream 21766 3666156 ~ 3670934 (+) True CI01000304_03666156_03669795
CI01000304_03615644_03617791.mRNA mRNA upstream 74292 3614933 ~ 3618408 (+) True CI01000304_03615644_03617791
CI01000304_03376929_03378015.mRNA mRNA upstream 314517 3376871 ~ 3378183 (+) True CI01000304_03376929_03378015
CI01000304_03353284_03357099.mRNA mRNA upstream 335136 3351741 ~ 3357564 (+) True CI01000304_03353284_03357099
CI01000304_03278369_03283013.mRNA mRNA upstream 409517 3276308 ~ 3283183 (+) True CI01000304_03278369_03283013
CI01000304_03975032_03978067.mRNA mRNA downstream 279664 3975032 ~ 3978545 (+) True CI01000304_03975032_03978067
CI01000304_03984177_03996203.mRNA mRNA downstream 288809 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_04170630_04190266.mRNA mRNA downstream 475262 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_04190428_04208535.mRNA mRNA downstream 495060 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
CI01000304_04223309_04223602.mRNA mRNA downstream 527941 4223309 ~ 4223769 (+) True CI01000304_04223309_04223602
TU481280 other upstream 1599022 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 2817451 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3128249 558092 ~ 564451 (+) True G418059
TU480131 other upstream 3464847 226703 ~ 227853 (+) True G417987
TU482914 other downstream 607968 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 1477855 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 2545865 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3657281 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3788773 7484141 ~ 7484688 (+) True G421435

Expression Profile