RNA id: TU484058


Basic Information

Item Value
RNA id TU484058
length 208
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G421471
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3788719 ~ 3788926 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATTTGCAGTGGCTTTTCTCAAAATTTGCGGCAATATTTACAGCATTTCTTGTTGTTTTGCAGTGAAAATATACAACAGACAACATTCTTTTAACATCGTTATTACTTTTCTGACCTTGAGAATCATTGCAGGGCTCCAGACTAACATTTGAGGGCAGTAGCACCGGTGCCATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484052 lncRNA downstream 28974 3759418 ~ 3759745 (-) True G421465
TU482569 lncRNA downstream 310610 3419922 ~ 3478109 (-) True G420150
TU482644 lncRNA downstream 399506 3387678 ~ 3389213 (-) True G420221
TU482240 lncRNA downstream 702094 3085419 ~ 3086625 (-) True G419842
TU482238 lncRNA downstream 709117 3079366 ~ 3079602 (-) True G419840
TU484084 lncRNA upstream 214113 4003039 ~ 4003732 (-) True G421497
TU484255 lncRNA upstream 318337 4107263 ~ 4107557 (-) False G421655
TU484256 lncRNA upstream 318337 4107263 ~ 4107557 (-) True G421655
TU484266 lncRNA upstream 447371 4236297 ~ 4237760 (-) True G421663
TU484337 lncRNA upstream 514230 4303156 ~ 4303880 (-) False G421719
CI01000304_03763183_03764351.mRNA mRNA downstream 24308 3763155 ~ 3764411 (-) True CI01000304_03763183_03764351
CI01000304_03529068_03531228.mRNA mRNA downstream 257415 3528527 ~ 3531304 (-) True CI01000304_03529068_03531228
CI01000304_03483866_03493010.mRNA mRNA downstream 295709 3483840 ~ 3493010 (-) True CI01000304_03483866_03493010
CI01000304_03408538_03449725.mRNA mRNA downstream 338818 3408256 ~ 3449901 (-) True CI01000304_03408538_03449725
CI01000304_03398119_03398652.mRNA mRNA downstream 388349 3398039 ~ 3400370 (-) True CI01000304_03398119_03398652
CI01000304_03830154_03833600.mRNA mRNA upstream 39265 3828191 ~ 3833600 (-) True CI01000304_03830154_03833600
CI01000304_03845300_03848892.mRNA mRNA upstream 54673 3843599 ~ 3849333 (-) True CI01000304_03845300_03848892
CI01000304_03882070_03891383.mRNA mRNA upstream 92852 3881778 ~ 3892332 (-) True CI01000304_03882070_03891383
CI01000304_03937239_03940929.mRNA mRNA upstream 147938 3936864 ~ 3941362 (-) True CI01000304_03937239_03940929
CI01000304_03960519_03974458.mRNA mRNA upstream 171398 3960324 ~ 3974458 (-) True CI01000304_03960519_03974458
TU481702 other downstream 1522478 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 1523379 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 1523534 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 1523534 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 1552613 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 474819 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 872890 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 882446 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2688525 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2688525 6477451 ~ 6479033 (-) False G422250

Expression Profile