RNA id: TU482935


Basic Information

Item Value
RNA id TU482935
length 275
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G420466
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4107238 ~ 4107558 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCAGGGCAGGCAGCAAGGGTCACAGAGAATAAACAGTCCAAACGATAACAGGTAACAGTCCACGGGAAAACGCTCAGAGATGATCACCAAGGCAAATCAAGACTTCGCAAAGGGTGTGTGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGTGGAGTGTGCATGTGATTGGAAGGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACGGTGATCGTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482933 lncRNA upstream 1361 4105637 ~ 4105877 (+) True G420464
TU482925 lncRNA upstream 35281 4071703 ~ 4071957 (+) True G420456
TU482923 lncRNA upstream 43691 4063271 ~ 4063547 (+) True G420454
TU482766 lncRNA upstream 97242 4002893 ~ 4009996 (+) True G420333
TU482765 lncRNA upstream 103470 3942452 ~ 4003768 (+) False G420333
TU482875 lncRNA downstream 126251 4233809 ~ 4275246 (+) True G420436
TU482886 lncRNA downstream 155890 4263448 ~ 4265201 (+) True G420438
TU482978 lncRNA downstream 186007 4293565 ~ 4293939 (+) True G420504
TU482987 lncRNA downstream 201261 4308819 ~ 4309407 (+) True G420513
TU483134 lncRNA downstream 444508 4552066 ~ 4552528 (+) True G420642
CI01000304_03984177_03996203.mRNA mRNA upstream 110837 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_03975032_03978067.mRNA mRNA upstream 128693 3975032 ~ 3978545 (+) True CI01000304_03975032_03978067
CI01000304_03666156_03669795.mRNA mRNA upstream 436304 3666156 ~ 3670934 (+) True CI01000304_03666156_03669795
CI01000304_03615644_03617791.mRNA mRNA upstream 488830 3614933 ~ 3618408 (+) True CI01000304_03615644_03617791
CI01000304_03376929_03378015.mRNA mRNA upstream 729055 3376871 ~ 3378183 (+) True CI01000304_03376929_03378015
CI01000304_04170630_04190266.mRNA mRNA downstream 63072 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_04190428_04208535.mRNA mRNA downstream 82870 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
CI01000304_04223309_04223602.mRNA mRNA downstream 115751 4223309 ~ 4223769 (+) True CI01000304_04223309_04223602
CI01000304_04236578_04239825.mRNA mRNA downstream 128780 4236338 ~ 4240395 (+) True CI01000304_04236578_04239825
CI01000304_04318151_04331824.mRNA mRNA downstream 210593 4318151 ~ 4331892 (+) True CI01000304_04318151_04331824
TU481280 other upstream 2013560 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3231989 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3542787 558092 ~ 564451 (+) True G418059
TU480131 other upstream 3879385 226703 ~ 227853 (+) True G417987
TU482914 other downstream 195778 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 1065665 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 2133675 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3245091 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3376583 7484141 ~ 7484688 (+) True G421435

Expression Profile