RNA id: TU482978


Basic Information

Item Value
RNA id TU482978
length 375
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G420504
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4293565 ~ 4293939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAATACGTAGGTATTAATACGTAACTTTAAAAGACACAAAACTTACATTTTTGTACGTTTAGAAAGGTGCTAAAACGTACAATATTGACGTAATTATGGCACTAAAACGTAAAAATACTTACGTTTTTACAGCGAAAAAACGTAAAATATTTACGAATCTTTCATGTCATAAAGATATATGTATAATTTCCATTTTATCGTTTTGTAGATAAATGTAAGATCCCTAAACACCATCCCGAACCTAAACCTACCCATTTTATACATAATGTTTAAAGAATAAAACATAAAGAACAGAAATGCGTAGGAAAATGACAATTTTAGTAAAAAATATAACATTAAAACGATATTTTGATCCACTAATCCTACACCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482875 lncRNA upstream 18319 4233809 ~ 4275246 (+) True G420436
TU482886 lncRNA upstream 28364 4263448 ~ 4265201 (+) True G420438
TU482935 lncRNA upstream 186007 4107238 ~ 4107558 (+) True G420466
TU482933 lncRNA upstream 187688 4105637 ~ 4105877 (+) True G420464
TU482925 lncRNA upstream 221608 4071703 ~ 4071957 (+) True G420456
TU482987 lncRNA downstream 14880 4308819 ~ 4309407 (+) True G420513
TU483134 lncRNA downstream 258127 4552066 ~ 4552528 (+) True G420642
TU483148 lncRNA downstream 326183 4620122 ~ 4620710 (+) True G420655
TU483156 lncRNA downstream 338391 4632330 ~ 4632603 (+) True G420663
TU483048 lncRNA downstream 345524 4639463 ~ 4645086 (+) True G420556
CI01000304_04236578_04239825.mRNA mRNA upstream 53170 4236338 ~ 4240395 (+) True CI01000304_04236578_04239825
CI01000304_04223309_04223602.mRNA mRNA upstream 69796 4223309 ~ 4223769 (+) True CI01000304_04223309_04223602
CI01000304_04190428_04208535.mRNA mRNA upstream 84867 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
CI01000304_04170630_04190266.mRNA mRNA upstream 103299 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_03984177_03996203.mRNA mRNA upstream 297164 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_04318151_04331824.mRNA mRNA downstream 24212 4318151 ~ 4331892 (+) True CI01000304_04318151_04331824
CI01000304_04346530_04362348.mRNA mRNA downstream 52591 4346530 ~ 4363156 (+) True CI01000304_04346530_04362348
CI01000304_04365876_04367947.mRNA mRNA downstream 71672 4365611 ~ 4368201 (+) True CI01000304_04365876_04367947
CI01000304_04381131_04396006.mRNA mRNA downstream 87192 4381131 ~ 4396075 (+) True CI01000304_04381131_04396006
CI01000304_04407815_04421342.mRNA mRNA downstream 113415 4407354 ~ 4421434 (+) True CI01000304_04407815_04421342
TU481280 other upstream 2199887 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3418316 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3729114 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4065712 226703 ~ 227853 (+) True G417987
TU482914 other downstream 9397 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 879284 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1947294 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3058710 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3190202 7484141 ~ 7484688 (+) True G421435

Expression Profile