RNA id: TU484335


Basic Information

Item Value
RNA id TU484335
length 433
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G421719
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4303156 ~ 4303880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAAAGCCCCGAATGGTGGAGGGCTGCAGTGATGGTTGACTTTCTACAACTTTCTCCCATCTCCCGACTGCATCTCTGGAGCTCAGCCACAGTGATCTTTGGGTTCTTCTTTACCTCTCTCACCAAGGCTCTTCTCCCCCGATAGCTCAGTTTGGCCGGACGGCCAGCTCTAGGAAGGGTTCTGGTCATCCCAAACGTCTTCCATTTAAGGATTATGGAGGCCACTGTGCTCTTAGGAACCTTAAGTGCAGCAGAATTTTTTTTGTAACCTTGGCCAGATCTGTGCCTTGCCACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGGTCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484266 lncRNA downstream 65688 4236297 ~ 4237760 (-) True G421663
TU484255 lncRNA downstream 195891 4107263 ~ 4107557 (-) False G421655
TU484256 lncRNA downstream 195891 4107263 ~ 4107557 (-) True G421655
TU484084 lncRNA downstream 295169 4003039 ~ 4003732 (-) True G421497
TU484058 lncRNA downstream 514522 3788719 ~ 3788926 (-) True G421471
TU484352 lncRNA upstream 8479 4312359 ~ 4314973 (-) True G421723
TU484359 lncRNA upstream 31844 4335724 ~ 4335942 (-) True G421728
TU484371 lncRNA upstream 59586 4363466 ~ 4363736 (-) True G421740
TU484372 lncRNA upstream 60398 4364278 ~ 4364601 (-) True G421741
TU484373 lncRNA upstream 60855 4364735 ~ 4365021 (-) True G421742
CI01000304_04269487_04273391.mRNA mRNA downstream 30057 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04263955_04264962.mRNA mRNA downstream 38486 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04253975_04256004.mRNA mRNA downstream 45846 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04230808_04231542.mRNA mRNA downstream 71547 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04227914_04228723.mRNA mRNA downstream 74305 4227120 ~ 4229143 (-) True CI01000304_04227914_04228723
CI01000304_04370274_04377315.mRNA mRNA upstream 66394 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04396799_04405867.mRNA mRNA upstream 92908 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04429949_04448465.mRNA mRNA upstream 125737 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04458463_04459040.mRNA mRNA upstream 153733 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04517750_04518058.mRNA mRNA upstream 213714 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
TU484322 other downstream 38247 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2037207 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2038108 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2038263 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 357936 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 367492 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2173571 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2173571 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2173571 6477451 ~ 6479033 (-) False G422250

Expression Profile