RNA id: TU482914


Basic Information

Item Value
RNA id TU482914
length 497
RNA type TUCP
GC content 0.46
exon number 1
gene id G420445
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4303336 ~ 4303832 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTTTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAATTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGATGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482978 lncRNA upstream 9397 4293565 ~ 4293939 (+) True G420504
TU482875 lncRNA upstream 28090 4233809 ~ 4275246 (+) True G420436
TU482886 lncRNA upstream 38135 4263448 ~ 4265201 (+) True G420438
TU482935 lncRNA upstream 195778 4107238 ~ 4107558 (+) True G420466
TU482933 lncRNA upstream 197459 4105637 ~ 4105877 (+) True G420464
TU482987 lncRNA downstream 4987 4308819 ~ 4309407 (+) True G420513
TU483134 lncRNA downstream 248234 4552066 ~ 4552528 (+) True G420642
TU483148 lncRNA downstream 316290 4620122 ~ 4620710 (+) True G420655
TU483156 lncRNA downstream 328498 4632330 ~ 4632603 (+) True G420663
TU483048 lncRNA downstream 335631 4639463 ~ 4645086 (+) True G420556
CI01000304_04236578_04239825.mRNA mRNA upstream 62941 4236338 ~ 4240395 (+) True CI01000304_04236578_04239825
CI01000304_04223309_04223602.mRNA mRNA upstream 79567 4223309 ~ 4223769 (+) True CI01000304_04223309_04223602
CI01000304_04190428_04208535.mRNA mRNA upstream 94638 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
CI01000304_04170630_04190266.mRNA mRNA upstream 113070 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_03984177_03996203.mRNA mRNA upstream 306935 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_04318151_04331824.mRNA mRNA downstream 14319 4318151 ~ 4331892 (+) True CI01000304_04318151_04331824
CI01000304_04346530_04362348.mRNA mRNA downstream 42698 4346530 ~ 4363156 (+) True CI01000304_04346530_04362348
CI01000304_04365876_04367947.mRNA mRNA downstream 61779 4365611 ~ 4368201 (+) True CI01000304_04365876_04367947
CI01000304_04381131_04396006.mRNA mRNA downstream 77299 4381131 ~ 4396075 (+) True CI01000304_04381131_04396006
CI01000304_04407815_04421342.mRNA mRNA downstream 103522 4407354 ~ 4421434 (+) True CI01000304_04407815_04421342
TU481280 other upstream 2209658 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3428087 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3738885 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4075483 226703 ~ 227853 (+) True G417987
TU483012 other downstream 869391 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1937401 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3048817 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3180309 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3674796 7978628 ~ 7978814 (+) True G422786

Expression Profile