RNA id: TU484388


Basic Information

Item Value
RNA id TU484388
length 1187
lncRNA type intronic
GC content 0.39
exon number 2
gene id G421757
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4445389 ~ 4446674 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCTTTCAAAAACATTTGTATTAAAAAAAAAATAAAAAAAAACTTAAATCTTACCGACCTCAAACACACACACGTCAGATTGCCTATAAGATGTACTTGATCATTTCACAATATTCTGGCTAGCGTAAGCGTGAGTAATGTCTGCATGTGTGTAGGTGCTTTAGCTACTAAATACTGCCAGTGTCTCAGTGTTGAGCCATTCAGGAGCACATGTGTTTTTTCTAGGCTAGAAGTGATAGCGTGAGCTGTGGGCGTTGATTTGACCTCTGTGCATATAAAAGCCTGCGGCGCTTCCAGATACACTCTCAGTATAGTAGTTTGTGTGAGACTTCCTTAACACTTACGGAAAAAGCCTGCACTACTACTGCACCCTATTCAGTGTTAAAAGGAAAGTTCAGTTGAAACATTCTTCACAATCTTTTGTCTTCCACAAAAAAAAAAAAGTTACACAAGTCTGAAATGACATGAGGATGAGTAAATGACGACAATTTTTATTTTCGGTTGAACTTTCCTTTTAATAAACCGCCAGATGCATGGCCACTGAGCATCATACATCAAATCCTCTAAACGAAGAGCAAATGTCAATGTAGCAGCAAAATCTGCCATCAAACTTCTCATGCTGTATCTTCATGTGCAGCTCTGATGGAGACAGATGAAGAGAAAAAAACATTCAACTTCCTCTTGTGCAGTAACTACAACAGACACATTCAGATGAAAAGGAGGAGGCATTTTATGACCACACAAGACGCAGAGAGCCAAGAAACAACAGCTGATCTGTAAAGTCAAAGATGTTTGGGAAAAAAAACAAAAAACAAAAAAAACACTTTATTTTCATTGAAAAGTGACTCATGGCAAAGGTTAATGGCAAAACTATTGAGGCTACAGTGTTGTGGGTGGTTACCAGGGCGTTGCTAAGGTTTCTAGGTTATTCTGGGAGGTTACTTAATGTCTCAGGTCAAAAGAGCCCACCCACAAGTCTCTAGTCTGGTCTCTCAGTGTAAGCCTATGGGATTTCTGGCTCATTTAATACTGGAGAGACAGAGATAACGAAGTCGTCCCTGATAAATCTGTATTTAAATGTGCTCATTAGTACAGGCATCATGCCTCATTTCTACCCACAGCACGTCTTTTAAGTGTGTGTGATCTATTTTATCCACTGCGCTCAACTGACCCTCAGCAATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484373 lncRNA downstream 80368 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 80788 4364278 ~ 4364601 (-) True G421741
TU484371 lncRNA downstream 81653 4363466 ~ 4363736 (-) True G421740
TU484359 lncRNA downstream 109447 4335724 ~ 4335942 (-) True G421728
TU484352 lncRNA downstream 130416 4312359 ~ 4314973 (-) True G421723
TU484411 lncRNA upstream 175282 4621956 ~ 4623620 (-) True G421780
TU484414 lncRNA upstream 178026 4624700 ~ 4624922 (-) True G421782
TU484415 lncRNA upstream 178638 4625312 ~ 4625545 (-) True G421783
TU484417 lncRNA upstream 185515 4632189 ~ 4632647 (-) True G421785
TU484419 lncRNA upstream 187043 4633717 ~ 4633947 (-) True G421787
CI01000304_04396799_04405867.mRNA mRNA downstream 39522 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04370274_04377315.mRNA mRNA downstream 67908 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04269487_04273391.mRNA mRNA downstream 171998 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04263955_04264962.mRNA mRNA downstream 180427 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04253975_04256004.mRNA mRNA downstream 187787 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04458463_04459040.mRNA mRNA upstream 10939 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04517750_04518058.mRNA mRNA upstream 70920 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04522897_04527887.mRNA mRNA upstream 76175 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04536971_04554186.mRNA mRNA upstream 90297 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04579087_04595306.mRNA mRNA upstream 131764 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
TU484322 other downstream 180188 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2179148 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2180049 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2180204 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 215142 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 224698 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2030777 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2030777 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2030777 6477451 ~ 6479033 (-) False G422250

Expression Profile