RNA id: TU483156


Basic Information

Item Value
RNA id TU483156
length 274
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G420663
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4632330 ~ 4632603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACAAATTCTCCCCTCCTTCTCTTTGCTCTCTGAGGCAGATGTTTCCAAACTCATCCTTTCCAATCACCCTACTACCTGTCCGCTTGACCCTATCCCCACTCATCTTCTTCAGGCCATCTCCTCCTCAATTGTACCTGCACTCACTCACATGATCAATTCTTCTCTTCACACTGGTACATTTCCCACAGCTTTTAAGCAGGCTAGGATTACACCACTGCTTAAAAAACCCACTCTGAATCCAGCACTTTTAGAAAACTATAGACCGGTATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483148 lncRNA upstream 11620 4620122 ~ 4620710 (+) True G420655
TU483134 lncRNA upstream 79802 4552066 ~ 4552528 (+) True G420642
TU482987 lncRNA upstream 322923 4308819 ~ 4309407 (+) True G420513
TU482978 lncRNA upstream 338391 4293565 ~ 4293939 (+) True G420504
TU482875 lncRNA upstream 357084 4233809 ~ 4275246 (+) True G420436
TU483048 lncRNA downstream 6860 4639463 ~ 4645086 (+) True G420556
TU483166 lncRNA downstream 37960 4670563 ~ 4670788 (+) True G420673
TU483046 lncRNA downstream 39831 4672434 ~ 4672940 (+) True G420554
TU483114 lncRNA downstream 152326 4784929 ~ 4785256 (+) True G420622
TU483170 lncRNA downstream 153100 4785703 ~ 4785966 (+) True G420677
CI01000304_04563922_04573450.mRNA mRNA upstream 58880 4563709 ~ 4573450 (+) True CI01000304_04563922_04573450
CI01000304_04512680_04515061.mRNA mRNA upstream 115891 4512680 ~ 4516439 (+) True CI01000304_04512680_04515061
CI01000304_04461555_04498385.mRNA mRNA upstream 132642 4461186 ~ 4499688 (+) True CI01000304_04461555_04498385
CI01000304_04407815_04421342.mRNA mRNA upstream 210896 4407354 ~ 4421434 (+) True CI01000304_04407815_04421342
CI01000304_04381131_04396006.mRNA mRNA upstream 236255 4381131 ~ 4396075 (+) True CI01000304_04381131_04396006
CI01000304_04650911_04659754.mRNA mRNA downstream 18308 4650911 ~ 4660456 (+) True CI01000304_04650911_04659754
CI01000304_04679406_04680031.mRNA mRNA downstream 46697 4679300 ~ 4680037 (+) True CI01000304_04679406_04680031
CI01000304_04687431_04705845.mRNA mRNA downstream 54828 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04708075_04768393.mRNA mRNA downstream 74802 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04866074_04866590.mRNA mRNA downstream 232383 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
TU482914 other upstream 328498 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2538652 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3757081 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4067879 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4404477 226703 ~ 227853 (+) True G417987
TU483012 other downstream 540620 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1608630 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2720046 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2851538 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3346025 7978628 ~ 7978814 (+) True G422786

Expression Profile