RNA id: TU484427


Basic Information

Item Value
RNA id TU484427
length 414
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G421794
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4648552 ~ 4648965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCCCCAACTAAGTATTGAGTGCTGTACATGCTCATACTTTTCTTGTTCATACTTTTCGGTTGGCCAAGATTTCTAAAAATCCTTTCTTTGTATTGGTCTTAAGTAATATTCTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTGTCAGTTATAATCATCAAAATTAAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484419 lncRNA downstream 14605 4633717 ~ 4633947 (-) True G421787
TU484417 lncRNA downstream 15905 4632189 ~ 4632647 (-) True G421785
TU484415 lncRNA downstream 23007 4625312 ~ 4625545 (-) True G421783
TU484414 lncRNA downstream 23630 4624700 ~ 4624922 (-) True G421782
TU484411 lncRNA downstream 24932 4621956 ~ 4623620 (-) True G421780
TU484428 lncRNA upstream 400 4649365 ~ 4649665 (-) True G421795
TU484200 lncRNA upstream 20689 4669654 ~ 4670066 (-) True G421601
TU484496 lncRNA upstream 131216 4780181 ~ 4780495 (-) True G421860
TU484511 lncRNA upstream 236609 4885574 ~ 4885773 (-) True G421875
TU484524 lncRNA upstream 259465 4908430 ~ 4908939 (-) True G421884
CI01000304_04579087_04595306.mRNA mRNA downstream 52212 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 94366 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 120665 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 130494 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 189318 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04661808_04672936.mRNA mRNA upstream 12801 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04789939_04792844.mRNA mRNA upstream 140474 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 160211 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 245900 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 265555 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
TU484322 other downstream 383351 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2382311 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2383212 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2383367 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 12851 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 22407 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 1828486 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1828486 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1828486 6477451 ~ 6479033 (-) False G422250

Expression Profile