RNA id: TU484200


Basic Information

Item Value
RNA id TU484200
length 413
lncRNA type intronic
GC content 0.31
exon number 1
gene id G421601
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4669654 ~ 4670066 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGTTGTTTGCACACCTGGAGTAGCTCTGATCTTTCTCCAGGAAATCGGCTTATTAAACTCTGGTCTACACTAAGTATAGGACTTTTTGAAACCATGACAGATAAAACCGATTTCAGTTAATCTGGTTTAAAAGGCTATTTTAGTCTCTGTTTGGGAAACTGCCCCAATATGTTGTATTTTGAGTGAATTTCATGGTACTAGACAATATTCACATCTAAATTATGCATTACTTCTATATAAAATAATGCAATTATTAGAAGAAATATTTCATATTTTATTCATTTCGATTAATACTGTTTTTTAAAAAATATAGCAAAGGTATTAAATATCCAATGTATCAAAGGCAGATTGGGGTCTTCTGGTGGGAGTAAATCATTTGTGTGTATACATACATACATACATACATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484428 lncRNA downstream 19989 4649365 ~ 4649665 (-) True G421795
TU484427 lncRNA downstream 20689 4648552 ~ 4648965 (-) True G421794
TU484419 lncRNA downstream 35707 4633717 ~ 4633947 (-) True G421787
TU484417 lncRNA downstream 37007 4632189 ~ 4632647 (-) True G421785
TU484415 lncRNA downstream 44109 4625312 ~ 4625545 (-) True G421783
TU484496 lncRNA upstream 110115 4780181 ~ 4780495 (-) True G421860
TU484511 lncRNA upstream 215508 4885574 ~ 4885773 (-) True G421875
TU484524 lncRNA upstream 238364 4908430 ~ 4908939 (-) True G421884
TU484530 lncRNA upstream 273725 4943791 ~ 4944002 (-) True G421890
TU484531 lncRNA upstream 274065 4944131 ~ 4944346 (-) True G421891
CI01000304_04579087_04595306.mRNA mRNA downstream 73314 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 115468 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 141767 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 151596 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 210420 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04789939_04792844.mRNA mRNA upstream 119373 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 139110 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 224799 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 244454 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04935603_04968053.mRNA mRNA upstream 265436 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
TU484147 other downstream 3442 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 404453 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2403413 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2404314 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2404469 2262502 ~ 2265185 (-) False G419354
TU484137 other upstream 1306 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 1807385 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1807385 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1807385 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1807385 6477451 ~ 6479033 (-) True G422250

Expression Profile