RNA id: TU483166


Basic Information

Item Value
RNA id TU483166
length 226
lncRNA type intronic
GC content 0.32
exon number 1
gene id G420673
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4670563 ~ 4670788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTCCTTGGATTTGCTTCTTAATTCCATACAATTTTAAGCTTTTCCTGGTTCATTTCATGTTTTATAGGCAACTTTGGTCATGGTAATTCAGATCAGCAGTTTGTTTTAAATTAATCTTGTTTGTTTTAGTTCAGGACTTCACAGCCCTGGTGTTAGTAATTTGTACTTAATCTGTGTTTCAAAAAGCCATTCTTTAGGCCATGATTAACTATTCTAGATTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483048 lncRNA upstream 25477 4639463 ~ 4645086 (+) True G420556
TU483156 lncRNA upstream 37960 4632330 ~ 4632603 (+) True G420663
TU483148 lncRNA upstream 49853 4620122 ~ 4620710 (+) True G420655
TU483134 lncRNA upstream 118035 4552066 ~ 4552528 (+) True G420642
TU482987 lncRNA upstream 361156 4308819 ~ 4309407 (+) True G420513
TU483046 lncRNA downstream 1646 4672434 ~ 4672940 (+) True G420554
TU483114 lncRNA downstream 114141 4784929 ~ 4785256 (+) True G420622
TU483170 lncRNA downstream 114915 4785703 ~ 4785966 (+) True G420677
TU483178 lncRNA downstream 127894 4798682 ~ 4798933 (+) True G420685
TU483180 lncRNA downstream 129448 4800236 ~ 4800567 (+) True G420687
CI01000304_04650911_04659754.mRNA mRNA upstream 10107 4650911 ~ 4660456 (+) True CI01000304_04650911_04659754
CI01000304_04563922_04573450.mRNA mRNA upstream 97113 4563709 ~ 4573450 (+) True CI01000304_04563922_04573450
CI01000304_04512680_04515061.mRNA mRNA upstream 154124 4512680 ~ 4516439 (+) True CI01000304_04512680_04515061
CI01000304_04461555_04498385.mRNA mRNA upstream 170875 4461186 ~ 4499688 (+) True CI01000304_04461555_04498385
CI01000304_04407815_04421342.mRNA mRNA upstream 249129 4407354 ~ 4421434 (+) True CI01000304_04407815_04421342
CI01000304_04679406_04680031.mRNA mRNA downstream 8512 4679300 ~ 4680037 (+) True CI01000304_04679406_04680031
CI01000304_04687431_04705845.mRNA mRNA downstream 16643 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04708075_04768393.mRNA mRNA downstream 36617 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04866074_04866590.mRNA mRNA downstream 194198 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
CI01000304_04876496_04883240.mRNA mRNA downstream 205548 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
TU482914 other upstream 366731 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2576885 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3795314 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4106112 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4442710 226703 ~ 227853 (+) True G417987
TU483012 other downstream 502435 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1570445 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2681861 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2813353 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3307840 7978628 ~ 7978814 (+) True G422786

Expression Profile