RNA id: TU484496


Basic Information

Item Value
RNA id TU484496
length 315
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G421860
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4780181 ~ 4780495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACAGTTAGTGAAGCATTAAAGAACTACCCAAACTGCTAAACAACAGATTGGAGATTAAAATAATATCAGATTTGTCTAAACACAAAAAATATAGATGAAAAATTAGCTTAAGTAATACATTTACTTTTGCTATTGTTAAATAAATGTTCAGTGATATCTCCCAAAGATTTCTGAATTTTGGCGCAATTTTTTCTCTATATATTTTCGATATGGCAACTAGTAAATACGCTAAGTTTCTTCATGCTAGCGTGTGTGGAAGTATTTAAACCACGTGTGTTACAACTAACCCCACGTTAGTTTGTGCCCCGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484200 lncRNA downstream 110115 4669654 ~ 4670066 (-) True G421601
TU484428 lncRNA downstream 130516 4649365 ~ 4649665 (-) True G421795
TU484427 lncRNA downstream 131216 4648552 ~ 4648965 (-) True G421794
TU484419 lncRNA downstream 146234 4633717 ~ 4633947 (-) True G421787
TU484417 lncRNA downstream 147534 4632189 ~ 4632647 (-) True G421785
TU484511 lncRNA upstream 105079 4885574 ~ 4885773 (-) True G421875
TU484524 lncRNA upstream 127935 4908430 ~ 4908939 (-) True G421884
TU484530 lncRNA upstream 163296 4943791 ~ 4944002 (-) True G421890
TU484531 lncRNA upstream 163636 4944131 ~ 4944346 (-) True G421891
TU484551 lncRNA upstream 248542 5029037 ~ 5029363 (-) True G421905
CI01000304_04661808_04672936.mRNA mRNA downstream 107245 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04579087_04595306.mRNA mRNA downstream 183841 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 225995 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 252294 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 262123 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04789939_04792844.mRNA mRNA upstream 8944 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 28681 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 114370 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 134025 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04935603_04968053.mRNA mRNA upstream 155007 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
TU484137 other downstream 107234 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 113969 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 514980 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2513940 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2514841 2262738 ~ 2265340 (-) False G419354
TU484955 other upstream 1696956 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1696956 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1696956 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1696956 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1850591 6631086 ~ 6631499 (-) True G422354

Expression Profile