RNA id: TU483178


Basic Information

Item Value
RNA id TU483178
length 252
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G420685
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4798682 ~ 4798933 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAAATAGCTCATGCATAGTATTACACAAAAGCAGTTCTCAATAAGCAAGCAATGTTCCATTGCTACCAAACTGCAGTACTGTGCTTGTTGATAACAAACAAAAACAAAGACCGTAAGAGGTCTAGTTGTTTTTAATGATTGACTCCTAGTGCTCAGTGGAAAGATGGCTTATGGAGACATCTACAGCCCAGTACTACAAGCACCAGTCAGGGTGCAGTTGTCCATCTGGAGCAATCTGGGCAACATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483170 lncRNA upstream 12716 4785703 ~ 4785966 (+) True G420677
TU483114 lncRNA upstream 13426 4784929 ~ 4785256 (+) True G420622
TU483046 lncRNA upstream 125742 4672434 ~ 4672940 (+) True G420554
TU483166 lncRNA upstream 127894 4670563 ~ 4670788 (+) True G420673
TU483048 lncRNA upstream 153596 4639463 ~ 4645086 (+) True G420556
TU483180 lncRNA downstream 1303 4800236 ~ 4800567 (+) True G420687
TU483183 lncRNA downstream 3246 4802179 ~ 4802402 (+) True G420690
TU483185 lncRNA downstream 7873 4806806 ~ 4807219 (+) True G420692
TU483186 lncRNA downstream 8431 4807364 ~ 4807844 (+) True G420693
TU483187 lncRNA downstream 8925 4807858 ~ 4808057 (+) True G420694
CI01000304_04708075_04768393.mRNA mRNA upstream 30101 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04687431_04705845.mRNA mRNA upstream 92740 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04679406_04680031.mRNA mRNA upstream 118645 4679300 ~ 4680037 (+) True CI01000304_04679406_04680031
CI01000304_04650911_04659754.mRNA mRNA upstream 138226 4650911 ~ 4660456 (+) True CI01000304_04650911_04659754
CI01000304_04563922_04573450.mRNA mRNA upstream 225232 4563709 ~ 4573450 (+) True CI01000304_04563922_04573450
CI01000304_04866074_04866590.mRNA mRNA downstream 66053 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
CI01000304_04876496_04883240.mRNA mRNA downstream 77403 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
CI01000304_04902333_04911640.mRNA mRNA downstream 101282 4900215 ~ 4911778 (+) True CI01000304_04902333_04911640
CI01000304_04989817_04997932.mRNA mRNA downstream 189429 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05085761_05095609.mRNA mRNA downstream 286663 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
TU482914 other upstream 494850 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2705004 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3923433 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4234231 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4570829 226703 ~ 227853 (+) True G417987
TU483012 other downstream 374290 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1442300 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2553716 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2685208 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3179695 7978628 ~ 7978814 (+) True G422786

Expression Profile