RNA id: TU483180


Basic Information

Item Value
RNA id TU483180
length 332
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G420687
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4800236 ~ 4800567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGCTGTTATCGGTGCACACAGACGCACATACATACAAGGCTCGCGCGCACACAGAGAAAGAGAGAGAGGCGCGTTTCAGATAGCTCGCAAACTCCAAATTGATTTCTCTTTCGCGTCCTCAATGCACTTGGATGGACACATACACGCATTATGTCAGTCAAAATACCCCTCTCGGCAAGTATTCTCGTAAACACATTCGGTTATGTCTTAATTGAACAAGGTGAGAATTCGGATGTGTATCTATCGGATGTGTGCGTGCATGGGGTCTTACTCTTAAAGTGACAGCAACCTATAAATACCTGCTGTTGTCTGCCATGTAAATCAAACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483178 lncRNA upstream 1303 4798682 ~ 4798933 (+) True G420685
TU483170 lncRNA upstream 14270 4785703 ~ 4785966 (+) True G420677
TU483114 lncRNA upstream 14980 4784929 ~ 4785256 (+) True G420622
TU483046 lncRNA upstream 127296 4672434 ~ 4672940 (+) True G420554
TU483166 lncRNA upstream 129448 4670563 ~ 4670788 (+) True G420673
TU483183 lncRNA downstream 1612 4802179 ~ 4802402 (+) True G420690
TU483185 lncRNA downstream 6239 4806806 ~ 4807219 (+) True G420692
TU483186 lncRNA downstream 6797 4807364 ~ 4807844 (+) True G420693
TU483187 lncRNA downstream 7291 4807858 ~ 4808057 (+) True G420694
TU483107 lncRNA downstream 62816 4863383 ~ 4863859 (+) True G420615
CI01000304_04708075_04768393.mRNA mRNA upstream 31655 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04687431_04705845.mRNA mRNA upstream 94294 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04679406_04680031.mRNA mRNA upstream 120199 4679300 ~ 4680037 (+) True CI01000304_04679406_04680031
CI01000304_04650911_04659754.mRNA mRNA upstream 139780 4650911 ~ 4660456 (+) True CI01000304_04650911_04659754
CI01000304_04563922_04573450.mRNA mRNA upstream 226786 4563709 ~ 4573450 (+) True CI01000304_04563922_04573450
CI01000304_04866074_04866590.mRNA mRNA downstream 64419 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
CI01000304_04876496_04883240.mRNA mRNA downstream 75769 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
CI01000304_04902333_04911640.mRNA mRNA downstream 99648 4900215 ~ 4911778 (+) True CI01000304_04902333_04911640
CI01000304_04989817_04997932.mRNA mRNA downstream 187795 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05085761_05095609.mRNA mRNA downstream 285029 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
TU482914 other upstream 496404 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2706558 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3924987 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4235785 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4572383 226703 ~ 227853 (+) True G417987
TU483012 other downstream 372656 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1440666 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2552082 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2683574 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3178061 7978628 ~ 7978814 (+) True G422786

Expression Profile