RNA id: TU484511


Basic Information

Item Value
RNA id TU484511
length 200
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G421875
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4885574 ~ 4885773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATCTCTCCAGAACCAGGAAATGGAATGATTCATCGTGCAGCTTGCCTACTCATAGTTGGAGAGGTCCAACACGAAATCCAACATGACCCCGGCTGAGCGGTTTTCCAGTTACTGACTGGACTTGATAGGTGGTTTTGTTAGACCTCTTTTTGAGGTTGGGCTGGTGACAGAGGTCCCCTGATATGAAGTTGTCGGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484496 lncRNA downstream 105079 4780181 ~ 4780495 (-) True G421860
TU484200 lncRNA downstream 215508 4669654 ~ 4670066 (-) True G421601
TU484428 lncRNA downstream 235909 4649365 ~ 4649665 (-) True G421795
TU484427 lncRNA downstream 236609 4648552 ~ 4648965 (-) True G421794
TU484419 lncRNA downstream 251627 4633717 ~ 4633947 (-) True G421787
TU484524 lncRNA upstream 22657 4908430 ~ 4908939 (-) True G421884
TU484530 lncRNA upstream 58018 4943791 ~ 4944002 (-) True G421890
TU484531 lncRNA upstream 58358 4944131 ~ 4944346 (-) True G421891
TU484551 lncRNA upstream 143264 5029037 ~ 5029363 (-) True G421905
TU484552 lncRNA upstream 143637 5029410 ~ 5029694 (-) True G421906
CI01000304_04809176_04857217.mRNA mRNA downstream 28357 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04789939_04792844.mRNA mRNA downstream 92730 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04661808_04672936.mRNA mRNA downstream 212638 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04579087_04595306.mRNA mRNA downstream 289234 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 331388 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04894865_04896532.mRNA mRNA upstream 9092 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 28747 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04935603_04968053.mRNA mRNA upstream 49729 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
CI01000304_05039292_05067803.mRNA mRNA upstream 153213 5038986 ~ 5067814 (-) True CI01000304_05039292_05067803
CI01000304_05098315_05108511.mRNA mRNA upstream 211864 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
TU484137 other downstream 212627 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 219362 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 620373 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2619333 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2620389 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1591678 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1591678 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1591678 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1591678 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1745313 6631086 ~ 6631499 (-) True G422354

Expression Profile