RNA id: TU484524


Basic Information

Item Value
RNA id TU484524
length 324
lncRNA type antisense_over
GC content 0.57
exon number 3
gene id G421884
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4908430 ~ 4908939 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGGCCTTGAAGTTGCTTCAGATGTTGATAAACCATTGAGTGAAAGCCTGGCTTGAGTCTGTATGGGAGTGGCTGTTGAGAAGGTGGAGCTGCTGGTCAAAGTCACAAATGCAGGCTGGGGGAGCTGCGTAACGTATGGGGCTGGCAACACAGCGTAGCCCATGTTTCCAGAGCCGTGGGCGGGGGCGAGCACAGTGCCAGGCGGCAGGTTGGTGAGGTTAGGCTGGATCTGTGGCAGATGTGTGGCTGGCATGATGAGACGCTGGGGGGTCTGACTGGTGGTCACCACCTGAGCTGCTGACGTCAAGGGTTTGGGTACAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484511 lncRNA downstream 22657 4885574 ~ 4885773 (-) True G421875
TU484496 lncRNA downstream 127935 4780181 ~ 4780495 (-) True G421860
TU484200 lncRNA downstream 238364 4669654 ~ 4670066 (-) True G421601
TU484428 lncRNA downstream 258765 4649365 ~ 4649665 (-) True G421795
TU484427 lncRNA downstream 259465 4648552 ~ 4648965 (-) True G421794
TU484530 lncRNA upstream 34852 4943791 ~ 4944002 (-) True G421890
TU484531 lncRNA upstream 35192 4944131 ~ 4944346 (-) True G421891
TU484551 lncRNA upstream 120098 5029037 ~ 5029363 (-) True G421905
TU484552 lncRNA upstream 120471 5029410 ~ 5029694 (-) True G421906
TU484553 lncRNA upstream 121275 5030214 ~ 5030946 (-) True G421907
CI01000304_04894865_04896532.mRNA mRNA downstream 11725 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04809176_04857217.mRNA mRNA downstream 51213 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04789939_04792844.mRNA mRNA downstream 115586 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04661808_04672936.mRNA mRNA downstream 235494 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04579087_04595306.mRNA mRNA downstream 312090 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04914520_04932141.mRNA mRNA upstream 5581 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04935603_04968053.mRNA mRNA upstream 26563 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
CI01000304_05039292_05067803.mRNA mRNA upstream 130047 5038986 ~ 5067814 (-) True CI01000304_05039292_05067803
CI01000304_05098315_05108511.mRNA mRNA upstream 188698 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
CI01000304_05139300_05146419.mRNA mRNA upstream 230184 5139123 ~ 5146728 (-) True CI01000304_05139300_05146419
TU484137 other downstream 235483 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 242218 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 643229 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2642189 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2643245 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1568512 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1568512 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1568512 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1568512 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1722147 6631086 ~ 6631499 (-) True G422354

Expression Profile