RNA id: TU483036


Basic Information

Item Value
RNA id TU483036
length 487
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G420544
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4940767 ~ 4943519 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGATCCGTGTGAACGGGAATCGTTTTGACAATGTTGTCATCTGTACGAAAATCTTTTCAAAAACGCAAAGGAAAAACTTTTACGTTTTTAGTACAATGTTGTCGTGTAAACGTACCCTAAATGTATGTAAGAGTAACGGAGTGCTGTGCTCACTCTCTGCTGCAGCTGTGTAGATGGTGCCCGGCAGTTTGGGGTGCGGATCAGCGGTTTTGGCAGCGATGACCACATTGGCACCGTCCCTCGCAGCTTTGAGAGCAATGGCCTTGCCAATACCTCGGCTCGCTCCGGTAATGAAGACCGTACATCCAGCCAGCTTCCTAAAATAACCAGTGTTCTGCAGCATTCTGACTCGTGTATGATGTCTGAGCTGGGAACAGAGTTATGTGTGTAATATTAAACCAAGGACCTCTAAATGAAAAAGAAGGCTGTGAACTGCCCTTTACTCTAGTTACAGATTCCACTGCGACATAATTCACTCCACTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483040 lncRNA upstream 8652 4931127 ~ 4932115 (+) True G420548
TU483232 lncRNA upstream 11210 4929289 ~ 4929557 (+) True G420739
TU483231 lncRNA upstream 11827 4928423 ~ 4928940 (+) True G420738
TU483230 lncRNA upstream 12461 4927904 ~ 4928306 (+) True G420737
TU483229 lncRNA upstream 13673 4926715 ~ 4927094 (+) True G420736
TU483244 lncRNA downstream 92876 5036395 ~ 5036620 (+) True G420746
TU483245 lncRNA downstream 93177 5036696 ~ 5037056 (+) True G420747
TU483022 lncRNA downstream 93852 5037371 ~ 5038662 (+) True G420530
TU483092 lncRNA downstream 124025 5067544 ~ 5078275 (+) True G420600
TU482991 lncRNA downstream 247085 5190604 ~ 5192257 (+) False G420517
CI01000304_04902333_04911640.mRNA mRNA upstream 28989 4900215 ~ 4911778 (+) True CI01000304_04902333_04911640
CI01000304_04876496_04883240.mRNA mRNA upstream 57065 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
CI01000304_04866074_04866590.mRNA mRNA upstream 73697 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
CI01000304_04708075_04768393.mRNA mRNA upstream 172186 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04687431_04705845.mRNA mRNA upstream 234825 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04989817_04997932.mRNA mRNA downstream 44843 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05085761_05095609.mRNA mRNA downstream 142077 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_05122605_05137890.mRNA mRNA downstream 179086 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05149465_05165999.mRNA mRNA downstream 205178 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05173869_05175309.mRNA mRNA downstream 230158 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
TU482914 other upstream 636935 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2847089 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4065518 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4376316 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4712914 226703 ~ 227853 (+) True G417987
TU483012 other downstream 229704 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1297714 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2409130 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2540622 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3035109 7978628 ~ 7978814 (+) True G422786

Expression Profile