RNA id: TU484530


Basic Information

Item Value
RNA id TU484530
length 212
lncRNA type intronic
GC content 0.22
exon number 1
gene id G421890
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4943791 ~ 4944002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGTTTATGTGTACTTTGCACAGAGTTTGCAGAAATAGATCGTGTATTATTATTATTAAATTATTATTTTTATATTTATTATTTATAAACATTAACTATTACATCATTGTTATTATTAATTTTCATATTCATAAAACGAAATGGTATTTTTCATTTTACATGACGTAAATAAAACGTAATTATAATAGAAAGTATTCCTCCAAACTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484524 lncRNA downstream 34852 4908430 ~ 4908939 (-) True G421884
TU484511 lncRNA downstream 58018 4885574 ~ 4885773 (-) True G421875
TU484496 lncRNA downstream 163296 4780181 ~ 4780495 (-) True G421860
TU484200 lncRNA downstream 273725 4669654 ~ 4670066 (-) True G421601
TU484428 lncRNA downstream 294126 4649365 ~ 4649665 (-) True G421795
TU484531 lncRNA upstream 129 4944131 ~ 4944346 (-) True G421891
TU484551 lncRNA upstream 85035 5029037 ~ 5029363 (-) True G421905
TU484552 lncRNA upstream 85408 5029410 ~ 5029694 (-) True G421906
TU484553 lncRNA upstream 86212 5030214 ~ 5030946 (-) True G421907
TU484138 lncRNA upstream 93222 5037224 ~ 5038690 (-) True G421545
CI01000304_04914520_04932141.mRNA mRNA downstream 11650 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04894865_04896532.mRNA mRNA downstream 47086 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04809176_04857217.mRNA mRNA downstream 86574 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04789939_04792844.mRNA mRNA downstream 150947 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04661808_04672936.mRNA mRNA downstream 270855 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_05039292_05067803.mRNA mRNA upstream 94984 5038986 ~ 5067814 (-) True CI01000304_05039292_05067803
CI01000304_05098315_05108511.mRNA mRNA upstream 153635 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
CI01000304_05139300_05146419.mRNA mRNA upstream 195121 5139123 ~ 5146728 (-) True CI01000304_05139300_05146419
CI01000304_05194636_05197677.mRNA mRNA upstream 250626 5194628 ~ 5197867 (-) True CI01000304_05194636_05197677
CI01000304_05199154_05201984.mRNA mRNA upstream 254973 5198975 ~ 5203006 (-) True CI01000304_05199154_05201984
TU484137 other downstream 270844 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 277579 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 678590 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2677550 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2678606 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1533449 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1533449 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1533449 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1533449 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1687084 6631086 ~ 6631499 (-) True G422354

Expression Profile