RNA id: TU484531


Basic Information

Item Value
RNA id TU484531
length 216
lncRNA type intronic
GC content 0.40
exon number 1
gene id G421891
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4944131 ~ 4944346 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAACAAAAATGCAAAATCAGGTAAATAATTTAATTAAGTAGGCCTCTTATGTACACATATTATTGCAACAACGTCTATTCGGGTGACGTTTAAACGTCCGTAGTCTCTCCAACACACTAGAGGGCGCTACAGAATAAGCTGGCAATGTTATACAGAGAATGAGAAAGAGCTCTCTGGATGTAATTTGGGTGGAGCTAGAAGGTCCAACCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484530 lncRNA downstream 129 4943791 ~ 4944002 (-) True G421890
TU484524 lncRNA downstream 35192 4908430 ~ 4908939 (-) True G421884
TU484511 lncRNA downstream 58358 4885574 ~ 4885773 (-) True G421875
TU484496 lncRNA downstream 163636 4780181 ~ 4780495 (-) True G421860
TU484200 lncRNA downstream 274065 4669654 ~ 4670066 (-) True G421601
TU484551 lncRNA upstream 84691 5029037 ~ 5029363 (-) True G421905
TU484552 lncRNA upstream 85064 5029410 ~ 5029694 (-) True G421906
TU484553 lncRNA upstream 85868 5030214 ~ 5030946 (-) True G421907
TU484138 lncRNA upstream 92878 5037224 ~ 5038690 (-) True G421545
TU484599 lncRNA upstream 233239 5177585 ~ 5177800 (-) True G421952
CI01000304_04914520_04932141.mRNA mRNA downstream 11990 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04894865_04896532.mRNA mRNA downstream 47426 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04809176_04857217.mRNA mRNA downstream 86914 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04789939_04792844.mRNA mRNA downstream 151287 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04661808_04672936.mRNA mRNA downstream 271195 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_05039292_05067803.mRNA mRNA upstream 94640 5038986 ~ 5067814 (-) True CI01000304_05039292_05067803
CI01000304_05098315_05108511.mRNA mRNA upstream 153291 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
CI01000304_05139300_05146419.mRNA mRNA upstream 194777 5139123 ~ 5146728 (-) True CI01000304_05139300_05146419
CI01000304_05194636_05197677.mRNA mRNA upstream 250282 5194628 ~ 5197867 (-) True CI01000304_05194636_05197677
CI01000304_05199154_05201984.mRNA mRNA upstream 254629 5198975 ~ 5203006 (-) True CI01000304_05199154_05201984
TU484137 other downstream 271184 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 277919 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 678930 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2677890 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2678946 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1533105 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1533105 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1533105 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1533105 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1686740 6631086 ~ 6631499 (-) True G422354

Expression Profile