RNA id: TU483245


Basic Information

Item Value
RNA id TU483245
length 361
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G420747
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5036696 ~ 5037056 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGGAGTTTTAGAAAGCACAACTCAGTGTCTAACTTCAAATGATATACCAAGTATTAAGGTCATGCCTTGATCCTGTGGTTGCCATTGCATTTTACAGTTTTAAACATGTGATATGGTGCATGAATGGTGGCACACAAACTGAAACACAGGAAGTCAGAAAGAGGGCAGGAAACTAACTTGCATCAGCTTGAAAATAACTATTGTATTTCTACTGCAGCTAAAGGCCCGTTCACACCAAGAATGATAACTGTAATGGTAACATTAAAGATATAGTTCTAAAAATCATTCTAAAAATATAAAAAGAATAGTCCGCACCACAACTAGAATGATAACGGCACAGTGAAACTATATCATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483244 lncRNA upstream 76 5036395 ~ 5036620 (+) True G420746
TU483036 lncRNA upstream 93177 4940767 ~ 4943519 (+) True G420544
TU483040 lncRNA upstream 104581 4931127 ~ 4932115 (+) True G420548
TU483232 lncRNA upstream 107139 4929289 ~ 4929557 (+) True G420739
TU483231 lncRNA upstream 107756 4928423 ~ 4928940 (+) True G420738
TU483022 lncRNA downstream 315 5037371 ~ 5038662 (+) True G420530
TU483092 lncRNA downstream 30488 5067544 ~ 5078275 (+) True G420600
TU482991 lncRNA downstream 153548 5190604 ~ 5192257 (+) False G420517
TU482994 lncRNA downstream 153548 5190604 ~ 5192912 (+) False G420517
TU482995 lncRNA downstream 153548 5190604 ~ 5197784 (+) True G420517
CI01000304_04989817_04997932.mRNA mRNA upstream 38764 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_04902333_04911640.mRNA mRNA upstream 124918 4900215 ~ 4911778 (+) True CI01000304_04902333_04911640
CI01000304_04876496_04883240.mRNA mRNA upstream 152994 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
CI01000304_04866074_04866590.mRNA mRNA upstream 169626 4864986 ~ 4867070 (+) True CI01000304_04866074_04866590
CI01000304_04708075_04768393.mRNA mRNA upstream 268115 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_05085761_05095609.mRNA mRNA downstream 48540 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_05122605_05137890.mRNA mRNA downstream 85549 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05149465_05165999.mRNA mRNA downstream 111641 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05173869_05175309.mRNA mRNA downstream 136621 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05277392_05292162.mRNA mRNA downstream 240045 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
TU482914 other upstream 732864 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2943018 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4161447 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4472245 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4808843 226703 ~ 227853 (+) True G417987
TU483012 other downstream 136167 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1204177 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2315593 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2447085 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2941572 7978628 ~ 7978814 (+) True G422786

Expression Profile