RNA id: TU483286


Basic Information

Item Value
RNA id TU483286
length 409
lncRNA type intronic
GC content 0.36
exon number 1
gene id G420788
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5209597 ~ 5210005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCCATGTTTATTCTGAAGTCTCAAGAGATTTTGCGAGATTTCACAGTGTTCACAGTCGTGACCTCTGGTTGAAAATCTGTTCATGTTTGGTGTGCTGTCTGTGTCACACCATGGCACACCACACACTATAGGATCAAAAATGTTTGTCCTCATGTTTGTGGTCTCTCACATTTTGAAAATCTTTTAGTGTGTACCCAGCTTAACCAAAATACCAATAATATCAATAACAGTTCTTTTAATTTTAAATAAGCCTGAAATACACCAGAAGTGTATGCTTTACTATTTCCAGCAGGTCATCAAAAAAAGAATAGAACATATTACAATATAAAGACCACAACATAAACACTGTCATAGTTCATCAGTAGTAGATCATAAGCAATTGCTTGGCATAGATGTGCAGTATTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483285 lncRNA upstream 78 5208774 ~ 5209519 (+) True G420787
TU483284 lncRNA upstream 1674 5207703 ~ 5207923 (+) True G420786
TU483283 lncRNA upstream 1942 5207310 ~ 5207655 (+) True G420785
TU483030 lncRNA upstream 2630 5202272 ~ 5206967 (+) True G420538
TU482995 lncRNA upstream 11813 5190604 ~ 5197784 (+) True G420517
TU483069 lncRNA downstream 1822 5211827 ~ 5212627 (+) True G420577
TU483287 lncRNA downstream 4109 5214114 ~ 5214350 (+) True G420789
TU483288 lncRNA downstream 4380 5214385 ~ 5214883 (+) True G420790
TU483072 lncRNA downstream 8146 5218151 ~ 5218664 (+) True G420580
TU483289 lncRNA downstream 8664 5218669 ~ 5219080 (+) True G420791
CI01000304_05173869_05175309.mRNA mRNA upstream 34072 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 43425 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 71428 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 113346 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 211665 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 67096 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 183847 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 279520 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 331533 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 374724 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 32806 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 905765 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3115919 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4334348 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4645146 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1031228 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2142644 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2274136 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2768623 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3021989 8234441 ~ 8234534 (+) True G423009

Expression Profile