RNA id: TU483289


Basic Information

Item Value
RNA id TU483289
length 412
lncRNA type intronic
GC content 0.39
exon number 1
gene id G420791
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5218669 ~ 5219080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCCAATTACTTAAGAGACAACTAGGAAACTCGAATTCATTAGGATTTTGCGGCCTTTCATGACCTCTGGTACGAGTTCTCTTTGGTGCAATGACGTTCTTCCACAATGAGTTACGCGCAGTGACCTCTGCCCATGATAAATCTGTACCAAATGTACCTCATTCATTGTTTCTCTAGAGTACACGTGCTAATCTTTGTCCAAGTGCCACTTCCTTATTTGCTTCTTGTAGTGTGTCAATTTCGCTTGCAACACTTCTGAACTGCTGCCTTAACCAATACTATATTGAGGCAACAACGCTTATTCATAAAATATAACCCTGAGGCCTAAAGTCAACATGAAATCAAAACACTATTTACATTGATACTACGCATTCTTGGTATTATTGTGCAAGACGCATCAGTGCATGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483072 lncRNA upstream 5 5218151 ~ 5218664 (+) True G420580
TU483288 lncRNA upstream 3786 5214385 ~ 5214883 (+) True G420790
TU483287 lncRNA upstream 4319 5214114 ~ 5214350 (+) True G420789
TU483069 lncRNA upstream 6042 5211827 ~ 5212627 (+) True G420577
TU483286 lncRNA upstream 8664 5209597 ~ 5210005 (+) True G420788
TU483033 lncRNA downstream 502 5219582 ~ 5219951 (+) True G420541
TU483050 lncRNA downstream 6573 5225653 ~ 5225936 (+) True G420558
TU483113 lncRNA downstream 7056 5226136 ~ 5226434 (+) True G420621
TU483042 lncRNA downstream 7698 5226778 ~ 5227468 (+) True G420550
TU483290 lncRNA downstream 9184 5228264 ~ 5228498 (+) True G420792
CI01000304_05173869_05175309.mRNA mRNA upstream 43144 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 52497 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 80500 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 122418 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 220737 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 58021 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 174772 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 270445 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 322458 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 365649 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 41878 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 914837 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3124991 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4343420 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4654218 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1022153 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2133569 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2265061 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2759548 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3012914 8234441 ~ 8234534 (+) True G423009

Expression Profile