RNA id: TU483113


Basic Information

Item Value
RNA id TU483113
length 299
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G420621
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5226136 ~ 5226434 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGAAGGAGGGCTTTTGTCAGATATCTGTCCGTCTGCTGGTCGTTGTAATGGCAGAAACAGCTGTTTGTGTAAATTAAAATTATGTAATTCTAACGTGTTATGAGACATGCTTTTTACTTTAATACTGGAGAAACGCATTGAAATGACTATGTCGAGACGTGGCTAATTGTTTTTAATCAAAATGCATGAATTAATTTTCCGGAGGCATTCAAACACTGCTCATTTAACTTATTTACTGTTTCTTTAGAAAACTATCCATATTCTTTCTTAATGTGTGTTTTTGGTTTTATTTTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483050 lncRNA upstream 200 5225653 ~ 5225936 (+) True G420558
TU483033 lncRNA upstream 6185 5219582 ~ 5219951 (+) True G420541
TU483289 lncRNA upstream 7056 5218669 ~ 5219080 (+) True G420791
TU483072 lncRNA upstream 7472 5218151 ~ 5218664 (+) True G420580
TU483288 lncRNA upstream 11253 5214385 ~ 5214883 (+) True G420790
TU483042 lncRNA downstream 344 5226778 ~ 5227468 (+) True G420550
TU483290 lncRNA downstream 1830 5228264 ~ 5228498 (+) True G420792
TU483291 lncRNA downstream 2596 5229030 ~ 5229292 (+) True G420793
TU483294 lncRNA downstream 4877 5231311 ~ 5231737 (+) False G420795
TU483293 lncRNA downstream 5077 5231511 ~ 5231737 (+) True G420795
CI01000304_05173869_05175309.mRNA mRNA upstream 50611 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 59964 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 87967 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 129885 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 228204 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 50667 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 167418 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 263091 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 315104 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 358295 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 49345 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 922304 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3132458 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4350887 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4661685 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1014799 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2126215 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2257707 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2752194 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3005560 8234441 ~ 8234534 (+) True G423009

Expression Profile