RNA id: TU483290


Basic Information

Item Value
RNA id TU483290
length 235
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G420792
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5228264 ~ 5228498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAATGAAGACATTATCACAAAAAAGATATTTTAAATGAAATCAGAGATTTCGGTCTCTCAATTGACAGTCCACGCAACTACCATTGTTGCTTCAAAAAGTTCAAGAATTTGAGACTTCAAGATTCGAGATCGTAAAATTAACCCATATGAATCGAGCAGTTTAGTCTAAATTCTAGATTGAATTTAGGCTTTTATTCACATTTAAACACTGATCAGCGAACATACACAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483042 lncRNA upstream 796 5226778 ~ 5227468 (+) True G420550
TU483113 lncRNA upstream 1830 5226136 ~ 5226434 (+) True G420621
TU483050 lncRNA upstream 2328 5225653 ~ 5225936 (+) True G420558
TU483033 lncRNA upstream 8313 5219582 ~ 5219951 (+) True G420541
TU483289 lncRNA upstream 9184 5218669 ~ 5219080 (+) True G420791
TU483291 lncRNA downstream 532 5229030 ~ 5229292 (+) True G420793
TU483294 lncRNA downstream 2813 5231311 ~ 5231737 (+) False G420795
TU483293 lncRNA downstream 3013 5231511 ~ 5231737 (+) True G420795
TU483323 lncRNA downstream 66142 5294640 ~ 5295422 (+) True G420824
TU483335 lncRNA downstream 160152 5388650 ~ 5389326 (+) True G420835
CI01000304_05173869_05175309.mRNA mRNA upstream 52739 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 62092 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 90095 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 132013 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 230332 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 48603 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 165354 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 261027 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 313040 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 356231 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 51473 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 924432 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3134586 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4353015 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4663813 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1012735 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2124151 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2255643 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2750130 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3003496 8234441 ~ 8234534 (+) True G423009

Expression Profile