RNA id: TU483291


Basic Information

Item Value
RNA id TU483291
length 263
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G420793
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5229030 ~ 5229292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACACCACTATAAAAATAGAAAAATAATTAAAAAAAAAACTGCACAAACATGCATTGCTTCAAACGGCATATAAAACTATTATATTAAAAGTAGTACTCACATTTAATGCTTAACTTGAGCTTGTGTCAGGTAAGAACACAAAAAGGTCAAGTATGATGTTAGTGATAAAACAAAAAAATTACATATCATTGCTTTAAATTTACACCTCGTATTTAATTAAACACTGTCATCGAAGTTGGTATTGTGGCTTTATATAGCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483290 lncRNA upstream 532 5228264 ~ 5228498 (+) True G420792
TU483042 lncRNA upstream 1562 5226778 ~ 5227468 (+) True G420550
TU483113 lncRNA upstream 2596 5226136 ~ 5226434 (+) True G420621
TU483050 lncRNA upstream 3094 5225653 ~ 5225936 (+) True G420558
TU483033 lncRNA upstream 9079 5219582 ~ 5219951 (+) True G420541
TU483294 lncRNA downstream 2019 5231311 ~ 5231737 (+) False G420795
TU483293 lncRNA downstream 2219 5231511 ~ 5231737 (+) True G420795
TU483323 lncRNA downstream 65348 5294640 ~ 5295422 (+) True G420824
TU483335 lncRNA downstream 159358 5388650 ~ 5389326 (+) True G420835
TU483330 lncRNA downstream 165211 5394910 ~ 5395103 (+) True G420830
CI01000304_05173869_05175309.mRNA mRNA upstream 53505 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 62858 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 90861 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 132779 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 231098 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 47809 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 164560 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 260233 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 312246 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 355437 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 52239 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 925198 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3135352 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4353781 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4664579 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1011941 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2123357 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2254849 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2749336 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3002702 8234441 ~ 8234534 (+) True G423009

Expression Profile