RNA id: TU483293


Basic Information

Item Value
RNA id TU483293
length 227
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G420795
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5231311 ~ 5231737 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAAAGACACGCCCCCTTGTCTTGGCGTAACTTTGACGTGCGTATCATCTACAATGGATTTCGTTTTCATTTCTAGTTCCGCGGTCGCATTCATTTCTTCAGAATCCACGTTAAGTGTCCTAACAGGTGGATTATATGGTTTTAATATGCGAACAGCTGATGATTCACGCGAATTCTGAGCATGCTCTTGAACTGTAAACAGTCGCGTGCTGTTTTTGTGGGATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483291 lncRNA upstream 2219 5229030 ~ 5229292 (+) True G420793
TU483290 lncRNA upstream 3013 5228264 ~ 5228498 (+) True G420792
TU483042 lncRNA upstream 4043 5226778 ~ 5227468 (+) True G420550
TU483113 lncRNA upstream 5077 5226136 ~ 5226434 (+) True G420621
TU483050 lncRNA upstream 5575 5225653 ~ 5225936 (+) True G420558
TU483323 lncRNA downstream 62903 5294640 ~ 5295422 (+) True G420824
TU483335 lncRNA downstream 156913 5388650 ~ 5389326 (+) True G420835
TU483330 lncRNA downstream 162766 5394910 ~ 5395103 (+) True G420830
TU483379 lncRNA downstream 246626 5478363 ~ 5478672 (+) True G420879
TU483381 lncRNA downstream 249137 5480874 ~ 5481156 (+) True G420881
CI01000304_05173869_05175309.mRNA mRNA upstream 55986 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 65339 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 93342 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 135260 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_04989817_04997932.mRNA mRNA upstream 233579 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05277392_05292162.mRNA mRNA downstream 45364 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05394708_05400373.mRNA mRNA downstream 162115 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 257788 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 309801 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 352992 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
TU483012 other upstream 54720 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 927679 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3137833 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4356262 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4667060 558092 ~ 564451 (+) True G418059
TU483706 other downstream 1009496 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2120912 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2252404 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2746891 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 3000257 8234441 ~ 8234534 (+) True G423009

Expression Profile