RNA id: TU484630


Basic Information

Item Value
RNA id TU484630
length 811
lncRNA type read_through
GC content 0.37
exon number 2
gene id G421973
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5248347 ~ 5297279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGGAGGCCTCACTGAGCCATTGGATTTCAGCAAAAATATCTTAATTTGTGTTTCGAAGATTAACGAAGGTCTTACGGGTGTGGAACGCCGTGAGGGTGAGTAATAAATGACATAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTTTTTGAGGAAAACATTCCAGGATTCCTGGAGTCCAGGAGTCCATATAGTGGACTTCACTGGGGTTCACCGGGTTGAAGGTCCAAATTGCAGTTTCAGTGCAGCTTCAAAGGGCTCTACGTGATCCCAAACGAGGAATAATTGTCTTATCTAGCGAAACGATCTGTCATTTTCTAAAAAAATAAAAATGTATATACTTTTTAACTACAAATGCTCATCTTGAACTAGCTCTGAGATCCGCACGCATGACGTAATCACGTAGGAAAGGTCACGCGTGACATAGATGAAAGTACAGATCCAGTGTCTACAAAGCGAACGTGCAAAGACTAAGCTAAACACCCTTTACAAAAAACAAAAAAGGTAAAACAATGATATCAGATGATTTTGAAGCTGGAGGAGAAAATGAGATGGAGTTTTTTGCCCTAGCGTGGTACTTCCACCTACGTTACGTGTGACCTTTCTAGCGGATCACAGAGCAGTGCAAGATGAGCATTTGTGGTTAAAAAAAGTGTGTGTGTATATATATATATATATATATATATATATATATATATAATTTTTTTTTTTTTTTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484609 lncRNA downstream 18542 5229480 ~ 5229805 (-) True G421962
TU484608 lncRNA downstream 18873 5229236 ~ 5229474 (-) True G421961
TU484599 lncRNA downstream 70547 5177585 ~ 5177800 (-) True G421952
TU484138 lncRNA downstream 209657 5037224 ~ 5038690 (-) True G421545
TU484553 lncRNA downstream 217401 5030214 ~ 5030946 (-) True G421907
TU484655 lncRNA upstream 80285 5377564 ~ 5377787 (-) True G421993
TU484674 lncRNA upstream 92208 5389487 ~ 5389707 (-) True CI01000304_05389793_05390092
TU484675 lncRNA upstream 95132 5392411 ~ 5392939 (-) True G422013
TU484676 lncRNA upstream 95705 5392984 ~ 5393480 (-) True G422014
TU484677 lncRNA upstream 107966 5405245 ~ 5405463 (-) True G422015
CI01000304_05244209_05247428.mRNA mRNA downstream 919 5243884 ~ 5247428 (-) True CI01000304_05244209_05247428
CI01000304_05231085_05231758.mRNA mRNA downstream 14594 5230538 ~ 5233753 (-) True CI01000304_05231085_05231758
CI01000304_05206827_05224699.mRNA mRNA downstream 23648 5206577 ~ 5224699 (-) True CI01000304_05206827_05224699
CI01000304_05199154_05201984.mRNA mRNA downstream 45341 5198975 ~ 5203006 (-) True CI01000304_05199154_05201984
CI01000304_05194636_05197677.mRNA mRNA downstream 50480 5194628 ~ 5197867 (-) True CI01000304_05194636_05197677
CI01000304_05363977_05376993.mRNA mRNA upstream 65547 5362826 ~ 5377522 (-) True CI01000304_05363977_05376993
CI01000304_05389793_05390092.mRNA mRNA upstream 92160 5389439 ~ 5390678 (-) False CI01000304_05389793_05390092
CI01000304_05410915_05460560.mRNA mRNA upstream 113636 5410915 ~ 5460560 (-) True CI01000304_05410915_05460560
CI01000304_05516992_05525104.mRNA mRNA upstream 218485 5515764 ~ 5525413 (-) True CI01000304_05516992_05525104
CI01000304_05550395_05551030.mRNA mRNA upstream 253050 5550329 ~ 5551199 (-) True CI01000304_05550395_05551030
TU484137 other downstream 575400 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 582135 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 983146 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2982106 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2983162 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1180172 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1180172 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1180172 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1180172 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1333807 6631086 ~ 6631499 (-) True G422354

Expression Profile