RNA id: TU483323


Basic Information

Item Value
RNA id TU483323
length 383
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G420824
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5294640 ~ 5295422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGACAGCTTAAAGGCCAGACTTTAGAAAGAATTACTATTACTATCAATGAGGAAATAGGTTAAAACACAGTAAAATATTAATTTAAGTCACAGTACATGGGTGAGGGAATGAACTGATGGTCCAACATGCAGAAACATGTTCAGTTTCTCTCTTTCTGTCTGGACAATACAGCGTTTAAGATGATTTGTAACCTCTGTAAATACTGAACTCAGTCTGAATCAATTACATTCTGGCCTTGTGCACTCCGCCGTGATTTTGTGGAGAGCTGTAGATGCCCTTAACGCGCTTGTTTTCGGGGTCAAAGGGTGATTTCAGGTGAGCTGTAGCCTTATATGTGACGCCCATCCTCTCCAGGGTGAATTCGCCACTGCGGATGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483294 lncRNA upstream 62903 5231311 ~ 5231737 (+) False G420795
TU483293 lncRNA upstream 62903 5231511 ~ 5231737 (+) True G420795
TU483291 lncRNA upstream 65348 5229030 ~ 5229292 (+) True G420793
TU483290 lncRNA upstream 66142 5228264 ~ 5228498 (+) True G420792
TU483042 lncRNA upstream 67172 5226778 ~ 5227468 (+) True G420550
TU483335 lncRNA downstream 93228 5388650 ~ 5389326 (+) True G420835
TU483330 lncRNA downstream 99081 5394910 ~ 5395103 (+) True G420830
TU483379 lncRNA downstream 182941 5478363 ~ 5478672 (+) True G420879
TU483381 lncRNA downstream 185452 5480874 ~ 5481156 (+) True G420881
TU483388 lncRNA downstream 194562 5489984 ~ 5490217 (+) True G420886
CI01000304_05277392_05292162.mRNA mRNA upstream 2478 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05173869_05175309.mRNA mRNA upstream 119115 5173677 ~ 5175525 (+) False CI01000304_05173869_05175309
CI01000304_05149465_05165999.mRNA mRNA upstream 128468 5148697 ~ 5166172 (+) True CI01000304_05149465_05165999
CI01000304_05122605_05137890.mRNA mRNA upstream 156471 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
CI01000304_05085761_05095609.mRNA mRNA upstream 198389 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_05394708_05400373.mRNA mRNA downstream 98430 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05489571_05504308.mRNA mRNA downstream 194103 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05541965_05547732.mRNA mRNA downstream 246116 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05584729_05612753.mRNA mRNA downstream 289307 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
CI01000304_05828658_05832773.mRNA mRNA downstream 533236 5828658 ~ 5832803 (+) True CI01000304_05828658_05832773
TU483012 other upstream 117849 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 990808 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3200962 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4419391 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4730189 558092 ~ 564451 (+) True G418059
TU483706 other downstream 945811 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2057227 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2188719 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2683206 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2936572 8234441 ~ 8234534 (+) True G423009

Expression Profile