RNA id: TU483533


Basic Information

Item Value
RNA id TU483533
length 225
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G421000
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5785704 ~ 5785928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAATGATGGTGACCTGGCCTAATTTGTAGAGGCTACGTTCACACAGAAACAGAATACGGTTGTTCTGTATTTGTGTACTTAAAGGGATAGTTCCCCCCAAAATTAAAAATCTGTCATCATTTATTCAACCTCTTGATGTTTTAAACCTGTACGACTTTATACAGTACCTTCTGCTGAAACATAGGAGATATTTTCAATAATGTTGGTAATCCAACCATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483391 lncRNA upstream 26384 5746908 ~ 5759320 (+) True G420888
TU483399 lncRNA upstream 27586 5690034 ~ 5758118 (+) False G420888
TU483412 lncRNA upstream 146545 5582600 ~ 5639159 (+) True G420892
TU483418 lncRNA upstream 277624 5499386 ~ 5500961 (+) True G420898
TU483388 lncRNA upstream 295487 5489984 ~ 5490217 (+) True G420886
TU483539 lncRNA downstream 31291 5817219 ~ 5817554 (+) True G421006
TU483540 lncRNA downstream 32100 5818028 ~ 5818258 (+) True G421007
TU483541 lncRNA downstream 34122 5820050 ~ 5820446 (+) True G421008
TU483542 lncRNA downstream 35266 5821194 ~ 5821775 (+) True G421009
TU483497 lncRNA downstream 38254 5824182 ~ 5824958 (+) False G420969
CI01000304_05584729_05612753.mRNA mRNA upstream 172906 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
CI01000304_05541965_05547732.mRNA mRNA upstream 237827 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05489571_05504308.mRNA mRNA upstream 281080 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05394708_05400373.mRNA mRNA upstream 385088 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05277392_05292162.mRNA mRNA upstream 493542 5277101 ~ 5292162 (+) True CI01000304_05277392_05292162
CI01000304_05828658_05832773.mRNA mRNA downstream 42730 5828658 ~ 5832803 (+) True CI01000304_05828658_05832773
CI01000304_05880320_05907760.mRNA mRNA downstream 94227 5880155 ~ 5907760 (+) True CI01000304_05880320_05907760
CI01000304_05931192_05933816.mRNA mRNA downstream 145264 5931192 ~ 5933816 (+) True CI01000304_05931192_05933816
CI01000304_05934136_05935124.mRNA mRNA downstream 148208 5934136 ~ 5935787 (+) True CI01000304_05934136_05935124
CI01000304_05965390_05976384.mRNA mRNA downstream 179293 5965221 ~ 5977140 (+) False CI01000304_05965390_05976384
TU483012 other upstream 608913 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 1481872 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3692026 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4910455 872670 ~ 875249 (+) True G418116
TU480224 other upstream 5221253 558092 ~ 564451 (+) True G418059
TU483706 other downstream 455305 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 1566721 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 1698213 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2192700 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2446066 8234441 ~ 8234534 (+) True G423009

Expression Profile