RNA id: TU483548


Basic Information

Item Value
RNA id TU483548
length 326
lncRNA type read_through
GC content 0.43
exon number 2
gene id G421015
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5838046 ~ 5888761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATGGCTTGAGGGTGAGTAAATCTTGGGGTAACTTTCATTTTAAAATGTAACTAATCCTTTAAGGCAAGCTTCGCAATTGCTATTGCACATTACAATTTTAGAGGGGTTTTGCACACTTCTCAGTTGACCAGACTGGGAGATCATCTAGACCAGCTGAAAACCTGCTTGACCAGGGTGGGAGACCAGCTTAGGTTTTAGCTTTTTCCCCATCAAGGTGAAGGAGGGCCTCTTTTCACTTGGGGCAGTAAACAATCACTAGCAAAAATCATCTAGCATAGTAACACCCTAACAACCACCCAGAATACCTTTCAACTGCATAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483498 lncRNA upstream 9768 5824182 ~ 5828278 (+) True G420969
TU483497 lncRNA upstream 13088 5824182 ~ 5824958 (+) False G420969
TU483542 lncRNA upstream 16271 5821194 ~ 5821775 (+) True G421009
TU483541 lncRNA upstream 17600 5820050 ~ 5820446 (+) True G421008
TU483540 lncRNA upstream 19788 5818028 ~ 5818258 (+) True G421007
TU483493 lncRNA downstream 51932 5940693 ~ 5947780 (+) True G420967
TU483578 lncRNA downstream 69349 5958110 ~ 5958343 (+) True G421043
TU483518 lncRNA downstream 87622 5976383 ~ 5980978 (+) True CI01000304_05965390_05976384
TU483602 lncRNA downstream 224584 6113345 ~ 6113593 (+) True G421067
TU483603 lncRNA downstream 227537 6116298 ~ 6116679 (+) True G421068
CI01000304_05828658_05832773.mRNA mRNA upstream 5243 5828658 ~ 5832803 (+) True CI01000304_05828658_05832773
CI01000304_05584729_05612753.mRNA mRNA upstream 225248 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
CI01000304_05541965_05547732.mRNA mRNA upstream 290169 5541538 ~ 5547877 (+) True CI01000304_05541965_05547732
CI01000304_05489571_05504308.mRNA mRNA upstream 333422 5489525 ~ 5504624 (+) False CI01000304_05489571_05504308
CI01000304_05394708_05400373.mRNA mRNA upstream 437430 5393852 ~ 5400616 (+) False CI01000304_05394708_05400373
CI01000304_05931192_05933816.mRNA mRNA downstream 42431 5931192 ~ 5933816 (+) True CI01000304_05931192_05933816
CI01000304_05934136_05935124.mRNA mRNA downstream 45375 5934136 ~ 5935787 (+) True CI01000304_05934136_05935124
CI01000304_05965390_05976384.mRNA mRNA downstream 76460 5965221 ~ 5977140 (+) False CI01000304_05965390_05976384
CI01000304_06006140_06015169.mRNA mRNA downstream 117325 6006086 ~ 6015802 (+) True CI01000304_06006140_06015169
CI01000304_06052958_06060880.mRNA mRNA downstream 164197 6052958 ~ 6060933 (+) True CI01000304_06052958_06060880
TU483012 other upstream 661255 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 1534214 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3744368 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 4962797 872670 ~ 875249 (+) True G418116
TU480224 other upstream 5273595 558092 ~ 564451 (+) True G418059
TU483706 other downstream 352472 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 1463888 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 1595380 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2089867 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2343233 8234441 ~ 8234534 (+) True G423009

Expression Profile