RNA id: TU483578


Basic Information

Item Value
RNA id TU483578
length 234
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G421043
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5958110 ~ 5958343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATTTTGAAAAGATTTAGCTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGGCTCTCTAATCTGAAAGAGTGCATAAAAAGATTGTGGAATACTTTAAAAACAATGTTCCTCAATGTCAAATTGTAAAGGTTTTGCAAATCTCATCATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483493 lncRNA upstream 10330 5940693 ~ 5947780 (+) True G420967
TU483548 lncRNA upstream 69349 5838046 ~ 5888761 (+) True G421015
TU483498 lncRNA upstream 129832 5824182 ~ 5828278 (+) True G420969
TU483497 lncRNA upstream 133152 5824182 ~ 5824958 (+) False G420969
TU483542 lncRNA upstream 136335 5821194 ~ 5821775 (+) True G421009
TU483518 lncRNA downstream 18040 5976383 ~ 5980978 (+) True CI01000304_05965390_05976384
TU483602 lncRNA downstream 155002 6113345 ~ 6113593 (+) True G421067
TU483603 lncRNA downstream 157955 6116298 ~ 6116679 (+) True G421068
TU483604 lncRNA downstream 160181 6118524 ~ 6118733 (+) True G421069
TU483510 lncRNA downstream 162449 6120792 ~ 6123362 (+) True G420977
CI01000304_05934136_05935124.mRNA mRNA upstream 22323 5934136 ~ 5935787 (+) True CI01000304_05934136_05935124
CI01000304_05931192_05933816.mRNA mRNA upstream 24294 5931192 ~ 5933816 (+) True CI01000304_05931192_05933816
CI01000304_05880320_05907760.mRNA mRNA upstream 50350 5880155 ~ 5907760 (+) True CI01000304_05880320_05907760
CI01000304_05828658_05832773.mRNA mRNA upstream 125307 5828658 ~ 5832803 (+) True CI01000304_05828658_05832773
CI01000304_05584729_05612753.mRNA mRNA upstream 345312 5584729 ~ 5612798 (+) True CI01000304_05584729_05612753
CI01000304_05965390_05976384.mRNA mRNA downstream 6878 5965221 ~ 5977140 (+) False CI01000304_05965390_05976384
CI01000304_06006140_06015169.mRNA mRNA downstream 47743 6006086 ~ 6015802 (+) True CI01000304_06006140_06015169
CI01000304_06052958_06060880.mRNA mRNA downstream 94615 6052958 ~ 6060933 (+) True CI01000304_06052958_06060880
CI01000304_06215366_06219149.mRNA mRNA downstream 256752 6215095 ~ 6219740 (+) True CI01000304_06215366_06219149
CI01000304_06315989_06316538.mRNA mRNA downstream 357090 6315433 ~ 6316538 (+) True CI01000304_06315989_06316538
TU483012 other upstream 781319 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 1654278 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 3864432 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 5082861 872670 ~ 875249 (+) True G418116
TU480224 other upstream 5393659 558092 ~ 564451 (+) True G418059
TU483706 other downstream 282890 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 1394306 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 1525798 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 2020285 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2273651 8234441 ~ 8234534 (+) True G423009

Expression Profile