RNA id: TU483602


Basic Information

Item Value
RNA id TU483602
length 249
lncRNA type inter_gene
GC content 0.23
exon number 1
gene id G421067
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6113345 ~ 6113593 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAGCCTATTAAACAGCTTATAAATCTACTAAAACTGTAGTTTAAAATGAAGTATTACATTTCTGCAAAGTTGATATGACTCCTGTCTTTAATTTATTTTCTCCATTTGAAAACATTAGACATTCTACATTTATTTTGCTTATTGTTAACATTAGTGTTGCTGCTGATGCTTTTTATAAATAAAATTATTTTTGTAATATGAAGATTAAAATTAACAAAATTTATTGGTGTATAAATAAGATTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483518 lncRNA upstream 132367 5976383 ~ 5980978 (+) True CI01000304_05965390_05976384
TU483578 lncRNA upstream 155002 5958110 ~ 5958343 (+) True G421043
TU483493 lncRNA upstream 165565 5940693 ~ 5947780 (+) True G420967
TU483548 lncRNA upstream 224584 5838046 ~ 5888761 (+) True G421015
TU483498 lncRNA upstream 285067 5824182 ~ 5828278 (+) True G420969
TU483603 lncRNA downstream 2705 6116298 ~ 6116679 (+) True G421068
TU483604 lncRNA downstream 4931 6118524 ~ 6118733 (+) True G421069
TU483510 lncRNA downstream 7199 6120792 ~ 6123362 (+) True G420977
TU483685 lncRNA downstream 73704 6187297 ~ 6187749 (+) True G421142
TU483700 lncRNA downstream 118541 6232134 ~ 6232431 (+) True G421156
CI01000304_06052958_06060880.mRNA mRNA upstream 52412 6052958 ~ 6060933 (+) True CI01000304_06052958_06060880
CI01000304_06006140_06015169.mRNA mRNA upstream 97543 6006086 ~ 6015802 (+) True CI01000304_06006140_06015169
CI01000304_05965390_05976384.mRNA mRNA upstream 136205 5965221 ~ 5977140 (+) False CI01000304_05965390_05976384
CI01000304_05934136_05935124.mRNA mRNA upstream 177558 5934136 ~ 5935787 (+) True CI01000304_05934136_05935124
CI01000304_05931192_05933816.mRNA mRNA upstream 179529 5931192 ~ 5933816 (+) True CI01000304_05931192_05933816
CI01000304_06215366_06219149.mRNA mRNA downstream 101502 6215095 ~ 6219740 (+) True CI01000304_06215366_06219149
CI01000304_06315989_06316538.mRNA mRNA downstream 201840 6315433 ~ 6316538 (+) True CI01000304_06315989_06316538
CI01000304_06317696_06323233.mRNA mRNA downstream 204103 6317696 ~ 6323827 (+) True CI01000304_06317696_06323233
CI01000304_06331541_06373056.mRNA mRNA downstream 217623 6331216 ~ 6373208 (+) True CI01000304_06331541_06373056
CI01000304_06384004_06392366.mRNA mRNA downstream 270411 6384004 ~ 6392743 (+) True CI01000304_06384004_06392366
TU483012 other upstream 936554 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 1809513 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 4019667 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 5238096 872670 ~ 875249 (+) True G418116
TU480224 other upstream 5548894 558092 ~ 564451 (+) True G418059
TU483706 other downstream 127640 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 1239056 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 1370548 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 1865035 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2118401 8234441 ~ 8234534 (+) True G423009

Expression Profile