RNA id: TU483603


Basic Information

Item Value
RNA id TU483603
length 382
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G421068
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6116298 ~ 6116679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGAAATGAAATGTAACATAAAACACAACCCTCTTTTATTTAAATGATGTTTTATTAACAAAATTCGGGAGGAGCAGGTGCAGATAATTAGACTAATTATAACAAGTGGAAAGCATTCAGCTAATCAACCAACAGAGGTATATCTACTGCAGACTTACCTCTGTTCGTTGACAGTTTATCAGCATTTCGGTTCACCCTTCTGCTATTATGTCGCAAGTTAACTTCTCTCCGTCCAACGACGAAGTCAACTTCCCCGAGGATCCTGCGCCTCCACCTGCCGGCCCCTCGACAACTCCTCCTCCGCCTGACACCGCACTCGAGCGCCTGCCCGTGCAGCTACACGCTCGCCTAGACGCCGAGCTCAGCCCTCGCCTCCACCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483602 lncRNA upstream 2705 6113345 ~ 6113593 (+) True G421067
TU483518 lncRNA upstream 135320 5976383 ~ 5980978 (+) True CI01000304_05965390_05976384
TU483578 lncRNA upstream 157955 5958110 ~ 5958343 (+) True G421043
TU483493 lncRNA upstream 168518 5940693 ~ 5947780 (+) True G420967
TU483548 lncRNA upstream 227537 5838046 ~ 5888761 (+) True G421015
TU483604 lncRNA downstream 1845 6118524 ~ 6118733 (+) True G421069
TU483510 lncRNA downstream 4113 6120792 ~ 6123362 (+) True G420977
TU483685 lncRNA downstream 70618 6187297 ~ 6187749 (+) True G421142
TU483700 lncRNA downstream 115455 6232134 ~ 6232431 (+) True G421156
TU483667 lncRNA downstream 150889 6267568 ~ 6269759 (+) True G421124
CI01000304_06052958_06060880.mRNA mRNA upstream 55365 6052958 ~ 6060933 (+) True CI01000304_06052958_06060880
CI01000304_06006140_06015169.mRNA mRNA upstream 100496 6006086 ~ 6015802 (+) True CI01000304_06006140_06015169
CI01000304_05965390_05976384.mRNA mRNA upstream 139158 5965221 ~ 5977140 (+) False CI01000304_05965390_05976384
CI01000304_05934136_05935124.mRNA mRNA upstream 180511 5934136 ~ 5935787 (+) True CI01000304_05934136_05935124
CI01000304_05931192_05933816.mRNA mRNA upstream 182482 5931192 ~ 5933816 (+) True CI01000304_05931192_05933816
CI01000304_06215366_06219149.mRNA mRNA downstream 98416 6215095 ~ 6219740 (+) True CI01000304_06215366_06219149
CI01000304_06315989_06316538.mRNA mRNA downstream 198754 6315433 ~ 6316538 (+) True CI01000304_06315989_06316538
CI01000304_06317696_06323233.mRNA mRNA downstream 201017 6317696 ~ 6323827 (+) True CI01000304_06317696_06323233
CI01000304_06331541_06373056.mRNA mRNA downstream 214537 6331216 ~ 6373208 (+) True CI01000304_06331541_06373056
CI01000304_06384004_06392366.mRNA mRNA downstream 267325 6384004 ~ 6392743 (+) True CI01000304_06384004_06392366
TU483012 other upstream 939507 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 1812466 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 4022620 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 5241049 872670 ~ 875249 (+) True G418116
TU480224 other upstream 5551847 558092 ~ 564451 (+) True G418059
TU483706 other downstream 124554 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 1235970 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 1367462 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 1861949 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 2115315 8234441 ~ 8234534 (+) True G423009

Expression Profile