RNA id: TU484919


Basic Information

Item Value
RNA id TU484919
length 358
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G422229
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6228540 ~ 6228897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTTGGCTATTGCTACAAATATACCCATGCGCCTTATGACTAGTTTTGTGGTCCAGGGTCACATTTCATTACACAATGGTATAAAAGCGAACAATGCAGTATTTTATAATAATGAAACCCATAGAAACCTCCGCCTTTAAGGTGTGGTCACATTAGTGAAATTTCAGCTAAATTTTGTTTGCAAAAATAAGTCCATTGTACATTGTCAACAGTGTAGTGATGTATAAAGCACAGCTCAGAAAAGACAAAAGTCACTTTCAAACCAATCAGCTTTCTGTTTAACAGTGATTTCATGTGACCAACCTGCACATGCAAAATTTTTGGGGAACTTTTTCATCCTTATACCAAATTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484918 lncRNA downstream 281 6227989 ~ 6228259 (-) True G422228
TU484917 lncRNA downstream 713 6227526 ~ 6227827 (-) True G422227
TU484852 lncRNA downstream 5584 6221146 ~ 6222956 (-) False CI01000304_06222605_06223109
TU484853 lncRNA downstream 5584 6221659 ~ 6222956 (-) True CI01000304_06222605_06223109
TU484907 lncRNA downstream 40530 6187732 ~ 6188010 (-) True G422217
TU484921 lncRNA upstream 2045 6230942 ~ 6231168 (-) True G422231
TU484922 lncRNA upstream 2325 6231222 ~ 6231467 (-) True G422232
TU484931 lncRNA upstream 34865 6263762 ~ 6264045 (-) True G422240
TU484858 lncRNA upstream 38668 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484951 lncRNA upstream 95562 6324459 ~ 6324994 (-) True G422246
CI01000304_06222605_06223109.mRNA mRNA downstream 4266 6221671 ~ 6224274 (-) False CI01000304_06222605_06223109
CI01000304_06204719_06212827.mRNA mRNA downstream 15364 6204106 ~ 6213176 (-) True CI01000304_06204719_06212827
CI01000304_06123328_06162242.mRNA mRNA downstream 66298 6120800 ~ 6162242 (-) True CI01000304_06123328_06162242
CI01000304_06092291_06110594.mRNA mRNA downstream 117896 6091994 ~ 6110644 (-) True CI01000304_06092291_06110594
CI01000304_06063226_06079147.mRNA mRNA downstream 149393 6063226 ~ 6079147 (-) True CI01000304_06063226_06079147
CI01000304_06234231_06236303.mRNA mRNA upstream 5308 6234205 ~ 6236409 (-) True CI01000304_06234231_06236303
CI01000304_06240590_06242902.mRNA mRNA upstream 11569 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06270879_06289706.mRNA mRNA upstream 40296 6269193 ~ 6290510 (-) False CI01000304_06270879_06289706
CI01000304_06300308_06314871.mRNA mRNA upstream 69808 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06324113_06327228.mRNA mRNA upstream 95194 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
TU484137 other downstream 1555593 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1562328 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 1963339 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 3962299 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 3963355 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 248554 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 248554 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 248554 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 248554 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 402189 6631086 ~ 6631499 (-) True G422354

Expression Profile