RNA id: TU484921


Basic Information

Item Value
RNA id TU484921
length 227
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G422231
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6230942 ~ 6231168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGGTATTCTCTTCAAAATAAAAAATAACGACTTTATTCAACAATATCTAGTGATGGGCGATTTCAAAAACACTGCTTCATGAAGCTTCGAAGCTTTACGAATCTTTTGTTTTGAATCAGTGGTTCGGAGCGTGTATCAAACTGCCAAAGTCACATGATTTCAGTAAACGAGTCTTCGTTACATCATAAGTGTTTCGAAATTTCAATGGTTCACCACTGGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484919 lncRNA downstream 2045 6228540 ~ 6228897 (-) True G422229
TU484918 lncRNA downstream 2683 6227989 ~ 6228259 (-) True G422228
TU484917 lncRNA downstream 3115 6227526 ~ 6227827 (-) True G422227
TU484852 lncRNA downstream 7986 6221146 ~ 6222956 (-) False CI01000304_06222605_06223109
TU484853 lncRNA downstream 7986 6221659 ~ 6222956 (-) True CI01000304_06222605_06223109
TU484922 lncRNA upstream 54 6231222 ~ 6231467 (-) True G422232
TU484931 lncRNA upstream 32594 6263762 ~ 6264045 (-) True G422240
TU484858 lncRNA upstream 36397 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484951 lncRNA upstream 93291 6324459 ~ 6324994 (-) True G422246
TU484966 lncRNA upstream 216576 6447744 ~ 6448495 (-) True G422256
CI01000304_06222605_06223109.mRNA mRNA downstream 6668 6221671 ~ 6224274 (-) False CI01000304_06222605_06223109
CI01000304_06204719_06212827.mRNA mRNA downstream 17766 6204106 ~ 6213176 (-) True CI01000304_06204719_06212827
CI01000304_06123328_06162242.mRNA mRNA downstream 68700 6120800 ~ 6162242 (-) True CI01000304_06123328_06162242
CI01000304_06092291_06110594.mRNA mRNA downstream 120298 6091994 ~ 6110644 (-) True CI01000304_06092291_06110594
CI01000304_06063226_06079147.mRNA mRNA downstream 151795 6063226 ~ 6079147 (-) True CI01000304_06063226_06079147
CI01000304_06234231_06236303.mRNA mRNA upstream 3037 6234205 ~ 6236409 (-) True CI01000304_06234231_06236303
CI01000304_06240590_06242902.mRNA mRNA upstream 9298 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06270879_06289706.mRNA mRNA upstream 38025 6269193 ~ 6290510 (-) False CI01000304_06270879_06289706
CI01000304_06300308_06314871.mRNA mRNA upstream 67537 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06324113_06327228.mRNA mRNA upstream 92923 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
TU484137 other downstream 1557995 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1564730 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 1965741 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 3964701 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 3965757 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 246283 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 246283 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 246283 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 246283 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 399918 6631086 ~ 6631499 (-) True G422354

Expression Profile