RNA id: TU484931


Basic Information

Item Value
RNA id TU484931
length 284
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G422240
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6263762 ~ 6264045 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCATTTTGGATTTCATGAGAGCTACACATTCCAAAAAAGTTGGGACAGGTAGCAATAAGAGGCCGGAAAAGTTAAATGTACATATAAGGAACAGCTGGAGGACCAATTTGCAACTTTTTAGGTCAATTGGCAGCATGATTGGGTATAAAAAGAGCCTCTCAGAGTGGCAGTGTCTCTCAGAAGTCAAGATGGGCAGAGGATCACCAATTCCCCCAATGCTGCGGCGAAAAATAGTGGAGCAATATCAGAAAGGAGTTTCTCAGAGAAAAATTGCAAAGAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484922 lncRNA downstream 32295 6231222 ~ 6231467 (-) True G422232
TU484921 lncRNA downstream 32594 6230942 ~ 6231168 (-) True G422231
TU484919 lncRNA downstream 34865 6228540 ~ 6228897 (-) True G422229
TU484918 lncRNA downstream 35503 6227989 ~ 6228259 (-) True G422228
TU484917 lncRNA downstream 35935 6227526 ~ 6227827 (-) True G422227
TU484858 lncRNA upstream 3520 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484951 lncRNA upstream 60414 6324459 ~ 6324994 (-) True G422246
TU484966 lncRNA upstream 183699 6447744 ~ 6448495 (-) True G422256
TU485038 lncRNA upstream 236674 6500719 ~ 6501031 (-) True G422318
TU485045 lncRNA upstream 246946 6510991 ~ 6519445 (-) True G422321
CI01000304_06240590_06242902.mRNA mRNA downstream 20750 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06234231_06236303.mRNA mRNA downstream 27353 6234205 ~ 6236409 (-) True CI01000304_06234231_06236303
CI01000304_06222605_06223109.mRNA mRNA downstream 39488 6221671 ~ 6224274 (-) False CI01000304_06222605_06223109
CI01000304_06204719_06212827.mRNA mRNA downstream 50586 6204106 ~ 6213176 (-) True CI01000304_06204719_06212827
CI01000304_06123328_06162242.mRNA mRNA downstream 101520 6120800 ~ 6162242 (-) True CI01000304_06123328_06162242
CI01000304_06270879_06289706.mRNA mRNA upstream 5148 6269193 ~ 6290510 (-) False CI01000304_06270879_06289706
CI01000304_06300308_06314871.mRNA mRNA upstream 34660 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06324113_06327228.mRNA mRNA upstream 60046 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
CI01000304_06395132_06433884.mRNA mRNA upstream 130990 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06461313_06465520.mRNA mRNA upstream 196411 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
TU484137 other downstream 1590815 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1597550 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 1998561 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 3997521 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 3998577 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 213406 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 213406 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 213406 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 213406 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 367041 6631086 ~ 6631499 (-) True G422354

Expression Profile