RNA id: TU484951


Basic Information

Item Value
RNA id TU484951
length 515
lncRNA type intronic
GC content 0.32
exon number 2
gene id G422246
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6324459 ~ 6324994 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAGTATAATCAAACACAGCTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACAGCACCTGAGTTAAATATATGAGTGTCACAGCAAAGGGTCTGAATATTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTGAGGAAAAAAAATGAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAGAGTGAAAAATTTAAGGGGGTCTGAATACTTTCCGTACCCACTGTAAGTAAAATTATTGGCATGTAATTGATTAATTAATGAACTAAATAAAACATTCGTGAAAAACATTTGAAAGTTGAAAAATTATCTTACCAAACTTTCCATGATGTTCACAGTCTGAGCTGGGGGTTCAACAAGGTTCTGTACTTGGTCCATTTTACTTATAGATTTTTAGTGATAATGTACATAAACATATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484858 lncRNA downstream 54700 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484931 lncRNA downstream 60414 6263762 ~ 6264045 (-) True G422240
TU484922 lncRNA downstream 92992 6231222 ~ 6231467 (-) True G422232
TU484921 lncRNA downstream 93291 6230942 ~ 6231168 (-) True G422231
TU484919 lncRNA downstream 95562 6228540 ~ 6228897 (-) True G422229
TU484966 lncRNA upstream 122750 6447744 ~ 6448495 (-) True G422256
TU485038 lncRNA upstream 175725 6500719 ~ 6501031 (-) True G422318
TU485045 lncRNA upstream 185997 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 234793 6559787 ~ 6560009 (-) True G422331
TU485059 lncRNA upstream 235492 6560486 ~ 6560717 (-) True G422332
CI01000304_06300308_06314871.mRNA mRNA downstream 9398 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06270879_06289706.mRNA mRNA downstream 33949 6269193 ~ 6290510 (-) False CI01000304_06270879_06289706
CI01000304_06240590_06242902.mRNA mRNA downstream 81447 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06234231_06236303.mRNA mRNA downstream 88050 6234205 ~ 6236409 (-) True CI01000304_06234231_06236303
CI01000304_06222605_06223109.mRNA mRNA downstream 100185 6221671 ~ 6224274 (-) False CI01000304_06222605_06223109
CI01000304_06395132_06433884.mRNA mRNA upstream 70041 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06461313_06465520.mRNA mRNA upstream 135462 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
CI01000304_06473293_06476260.mRNA mRNA upstream 148299 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06480836_06483554.mRNA mRNA upstream 155749 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06489010_06490993.mRNA mRNA upstream 163034 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
TU484137 other downstream 1651512 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1658247 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 2059258 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 4058218 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 4059274 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 152457 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 152457 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 152457 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 152457 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 306092 6631086 ~ 6631499 (-) True G422354

Expression Profile