RNA id: TU485038


Basic Information

Item Value
RNA id TU485038
length 313
lncRNA type intronic
GC content 0.35
exon number 1
gene id G422318
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6500719 ~ 6501031 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGCTGTAGGTGAAAAAAACAGAAGATTGAAACACTTTGATTGATTAAACATGGCTAATAAACACACGGCTGCCTTATTCTGTGTAAGAAGACACATCATCTCACAGAATGAGAGAATGAGAGTATGAGCTTTATTGCCAGGTATGTTTACACATACTAGGAATTTGTTGTAGTGACAGAAGCTCCACAGTGCAACAGAGTGACAGTGACAAGACAAGACACAGATATAAAAAGAACAATATACAAATATATACAATATACAAATATACAGAAGGATGCTCAGCTGTCATTATGAAGTGAGTTTGGAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484966 lncRNA downstream 52224 6447744 ~ 6448495 (-) True G422256
TU484951 lncRNA downstream 175725 6324459 ~ 6324994 (-) True G422246
TU484858 lncRNA downstream 230960 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484931 lncRNA downstream 236674 6263762 ~ 6264045 (-) True G422240
TU484922 lncRNA downstream 269252 6231222 ~ 6231467 (-) True G422232
TU485045 lncRNA upstream 9960 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 58756 6559787 ~ 6560009 (-) True G422331
TU485059 lncRNA upstream 59455 6560486 ~ 6560717 (-) True G422332
TU485071 lncRNA upstream 110737 6611768 ~ 6612117 (-) True G422343
TU485081 lncRNA upstream 129547 6630578 ~ 6630875 (-) True G422353
CI01000304_06489010_06490993.mRNA mRNA downstream 8525 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 16733 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 24353 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06461313_06465520.mRNA mRNA downstream 35199 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
CI01000304_06395132_06433884.mRNA mRNA downstream 66835 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06507688_06509486.mRNA mRNA upstream 6511 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06515961_06519125.mRNA mRNA upstream 14865 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06659869_06667425.mRNA mRNA upstream 158793 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 205039 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 224668 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
TU484955 other downstream 17224 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 17224 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 17224 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 17224 6477451 ~ 6479033 (-) True G422250
TU484137 other downstream 1827772 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU485082 other upstream 130055 6631086 ~ 6631499 (-) True G422354
TU485117 other upstream 243648 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 1129128 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2361192 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 3067325 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706

Expression Profile